Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis
…, CG Simpson, NH Syed, D Lewandowska… - Nucleic acids …, 2012 - academic.oup.com
Alternative splicing (AS) coupled to nonsense-mediated decay (NMD) is a post-transcriptional
mechanism for regulating gene expression. We have used a high-resolution AS RT–PCR …
mechanism for regulating gene expression. We have used a high-resolution AS RT–PCR …
Proteomic Analysis of the Arabidopsis Nucleolus Suggests Novel Nucleolar Functions
…, GP Clark, R Boon, D Lewandowska… - Molecular biology of …, 2005 - Am Soc Cell Biol
The eukaryotic nucleolus is involved in ribosome biogenesis and a wide range of other
RNA metabolism and cellular functions. An important step in the functional analysis of the …
RNA metabolism and cellular functions. An important step in the functional analysis of the …
A high quality Arabidopsis transcriptome for accurate transcript-level analysis of alternative splicing
…, M Spensley, JC Entizne, D Lewandowska… - Nucleic acids …, 2017 - academic.oup.com
Alternative splicing generates multiple transcript and protein isoforms from the same gene
and thus is important in gene expression regulation. To date, RNA-sequencing (RNA-seq) is …
and thus is important in gene expression regulation. To date, RNA-sequencing (RNA-seq) is …
Involvement of the nuclear cap-binding protein complex in alternative splicing in Arabidopsis thaliana
…, A Ciesiolka, L Szewc, D Lewandowska… - Nucleic Acids …, 2010 - academic.oup.com
The nuclear cap-binding protein complex (CBC) participates in 5′ splice site selection of
introns that are proximal to the mRNA cap. However, it is not known whether CBC has a role in …
introns that are proximal to the mRNA cap. However, it is not known whether CBC has a role in …
Aberrant mRNA Transcripts and the Nonsense-Mediated Decay Proteins UPF2 and UPF3 Are Enriched in the Arabidopsis Nucleolus
SH Kim, OA Koroleva, D Lewandowska… - The Plant …, 2009 - academic.oup.com
The eukaryotic nucleolus is multifunctional and involved in the metabolism and assembly of
many different RNAs and ribonucleoprotein particles as well as in cellular functions, such as …
many different RNAs and ribonucleoprotein particles as well as in cellular functions, such as …
[HTML][HTML] Identification and rapid mapping of a gene conferring broad-spectrum late blight resistance in the diploid potato species Solanum verrucosum through DNA …
X Chen, D Lewandowska, MR Armstrong… - Theoretical and Applied …, 2018 - Springer
Key message A broad-spectrum late blight disease-resistance gene from Solanum verrucosum
has been mapped to potato chromosome 9. The gene is distinct from previously identified…
has been mapped to potato chromosome 9. The gene is distinct from previously identified…
[HTML][HTML] Plant SILAC: Stable-Isotope Labelling with Amino Acids of Arabidopsis Seedlings for Quantitative Proteomics
D Lewandowska, S ten Have, K Hodge, V Tillemans… - PLoS …, 2013 - journals.plos.org
Stable Isotope Labelling by Amino acids in Cell culture (SILAC) is a powerful technique for
comparative quantitative proteomics, which has recently been applied to a number of different …
comparative quantitative proteomics, which has recently been applied to a number of different …
[HTML][HTML] Barley anther and meiocyte transcriptome dynamics in meiotic prophase I
In flowering plants, successful germinal cell development and meiotic recombination
depend upon a combination of environmental and genetic factors. To gain insights into this …
depend upon a combination of environmental and genetic factors. To gain insights into this …
Cloning and characterization of two subunits of Arabidopsis thaliana nuclear cap-binding complex
M Kmieciak, CG Simpson, D Lewandowska… - Gene, 2002 - Elsevier
In this report we characterize two Arabidopsisthaliana proteins, named AtCBP20 and AtCBP80,
that are homologues of human subunits of a nuclear cap-binding protein complex (CBC). …
that are homologues of human subunits of a nuclear cap-binding protein complex (CBC). …
Determinants of plant U12-dependent intron splicing efficiency
D Lewandowska, CG Simpson, GP Clark… - The Plant …, 2004 - academic.oup.com
Factors affecting splicing of plant U12-dependent introns have been examined by extensive
mutational analyses in an in vivo tobacco (Nicotiana tabacum) protoplast system using …
mutational analyses in an in vivo tobacco (Nicotiana tabacum) protoplast system using …