Pooled CRISPR screening with single-cell transcriptome readout

…, J Klughammer, LC Schuster, A Kuchler, D Alpar… - Nature …, 2017 - nature.com
CRISPR-based genetic screens are accelerating biological discovery, but current methods
have inherent limitations. Widely used pooled screens are restricted to simple readouts …

Longitudinal molecular trajectories of diffuse glioma in adults

…, KJ Anderson, O Abiola, K Aldape, KD Alfaro, D Alpar… - Nature, 2019 - nature.com
The evolutionary processes that drive universal therapeutic resistance in adult patients with
diffuse glioma remain unclear 1 , 2 . Here we analysed temporally separated DNA-…

The DNA methylation landscape of glioblastoma disease progression shows extensive heterogeneity in time and space

…, M Augustin, M Mischkulnig, T Ströbel, D Alpar… - Nature medicine, 2018 - nature.com
Glioblastoma is characterized by widespread genetic and transcriptional heterogeneity, yet
little is known about the role of the epigenome in glioblastoma disease progression. Here, …

[HTML][HTML] Chromatin mapping and single-cell immune profiling define the temporal dynamics of ibrutinib response in CLL

…, A Nemc, S Tasnády, M Réti, Z Mátrai, D Alpár… - Nature …, 2020 - nature.com
The Bruton tyrosine kinase (BTK) inhibitor ibrutinib provides effective treatment for patients
with chronic lymphocytic leukemia (CLL), despite extensive heterogeneity in this disease. To …

State‐of‐the‐art FISHing: Automated analysis of cytogenetic aberrations in interphase nuclei

G Pajor, B Kajtár, L Pajor, D Alpár - Cytometry Part A, 2012 - Wiley Online Library
Interphase fluorescence in situ hybridization (i‐FISH) is a powerful tool for visualizing
various molecular targets in non‐dividing cells. Manual scoring of i‐FISH signals is a labor …

Dissection of subclonal evolution by temporal mutation profiling in chronic lymphocytic leukemia patients treated with ibrutinib

A Gángó, D Alpár, B Galik, D Marosvári… - … Journal of Cancer, 2020 - Wiley Online Library
The Bruton's tyrosine kinase (BTK) inhibitor ibrutinib is inducing durable responses in chronic
lymphocytic leukemia (CLL) patients with refractory/relapsed disease or with TP53 defect, …

Molecular subtypes and genomic profile of primary central nervous system lymphoma

C Bödör, D Alpár, D Marosvári, B Galik… - … of Neuropathology & …, 2020 - academic.oup.com
Primary central nervous system lymphomas (PCNSL) are aggressive non-Hodgkin
lymphomas affecting the central nervous system (CNS). Although immunophenotyping studies …

The genomic landscape of teenage and young adult T‐cell acute lymphoblastic leukemia

…, CL Furness, S Nakjang, A Enshaei, D Alpar… - Cancer …, 2021 - Wiley Online Library
Background Treatment on risk adapted intensive pediatric protocols has improved outcome
for teenagers and young adults (TYA) with T‐cell acute lymphoblastic leukemia (T‐ALL). …

[HTML][HTML] Quantitative analysis and monitoring of EZH2 mutations using liquid biopsy in follicular lymphoma

…, N Nagy, L Kiss, L Kotmayer, A Matolcsy, D Alpár… - Genes, 2020 - mdpi.com
Recent advances in molecular technologies enable sensitive and quantitative assessment
of circulating tumor DNA, offering a noninvasive disease monitoring tool for patients with …

Screening and monitoring of the BTKC481S mutation in a real‐world cohort of patients with relapsed/refractory chronic lymphocytic leukaemia during ibrutinib …

…, A Matolcsy, Z Mátrai, D Alpár - British Journal of …, 2021 - Wiley Online Library
The Bruton's tyrosine kinase (BTK) inhibitor ibrutinib has revolutionised the therapeutic
landscape of chronic lymphocytic leukaemia (CLL). Acquired mutations emerging at position …