User profiles for Dongqing Wei
Dongqing WeiProfessor of Bioinformatics/Computational Physics/Chemistry, Shanghai Jiaotong University Verified email at sjtu.edu.cn Cited by 15890 |
Higher infectivity of the SARS‐CoV‐2 new variants is associated with K417N/T, E484K, and N501Y mutants: an insight from structural data
…, AA Abbasi, A Mohammad, DQ Wei - Journal of cellular …, 2021 - Wiley Online Library
The evolution of the SARS‐CoV‐2 new variants reported to be 70% more contagious than
the earlier one is now spreading fast worldwide. There is an instant need to discover how the …
the earlier one is now spreading fast worldwide. There is an instant need to discover how the …
Orientational order in simple dipolar liquids: computer simulation of a ferroelectric nematic phase
Molecular-dynamics simulations are used to show that strongly interacting dipolar spheres
can form a ferroelectric nematic phase. This is the first demonstration that dipolar forces alone …
can form a ferroelectric nematic phase. This is the first demonstration that dipolar forces alone …
[HTML][HTML] How reliable are molecular dynamics simulations of membrane active antimicrobial peptides?
Membrane-active antimicrobial peptides (AMPs) are challenging to study experimentally, but
relatively easy to investigate using molecular dynamics (MD) computer simulations. For this …
relatively easy to investigate using molecular dynamics (MD) computer simulations. For this …
Molecular modeling and chemical modification for finding peptide inhibitor against severe acute respiratory syndrome coronavirus main proteinase
Severe acute respiratory syndrome (SARS) is a respiratory disease caused by a newly
found virus, called SARS coronavirus. In this study, the cleavage mechanism of the SARS …
found virus, called SARS coronavirus. In this study, the cleavage mechanism of the SARS …
Binding mechanism of coronavirus main proteinase with ligands and its implication to drug design against SARS
In order to stimulate the development of drugs against severe acute respiratory syndrome (SARS),
based on the atomic coordinates of the SARS coronavirus main proteinase …
based on the atomic coordinates of the SARS coronavirus main proteinase …
Ferroelectric liquid-crystal and solid phases formed by strongly interacting dipolar soft spheres
Molecular-dynamics simulation results are reported for systems of strongly interacting dipolar
soft spheres. Calculations have been carried out along two isotherms and the structure of …
soft spheres. Calculations have been carried out along two isotherms and the structure of …
Conformational Preferences of π–π Stacking Between Ligand and Protein, Analysis Derived from Crystal Structure Data Geometric Preference of π–π Interaction
Y Zhao, J Li, H Gu, D Wei, Y Xu, W Fu, Z Yu - … Sciences: Computational Life …, 2015 - Springer
π–π Interaction is a direct attractive non-covalent interaction between aromatic moieties,
playing an important role in DNA stabilization, drug intercalation, etc. Aromatic rings interact …
playing an important role in DNA stabilization, drug intercalation, etc. Aromatic rings interact …
Exosomal ncRNAs profiling of mycobacterial infection identified miRNA-185-5p as a novel biomarker for tuberculosis
…, J Wang, X Guo, H Wang, X Yu, D Wei… - Briefings in …, 2021 - academic.oup.com
Background: There are ever increasing researches implying that noncoded RNAs (ncRNAs)
specifically circular RNAs (circRNAs) and microRNAs (miRNAs) in exosomes play vital …
specifically circular RNAs (circRNAs) and microRNAs (miRNAs) in exosomes play vital …
Structure-based design of promising natural products to inhibit thymidylate kinase from Monkeypox virus and validation using free energy calculations
…, HA Qudsia, Y Waheed, FM Alshabrmi, DQ Wei - Computers in Biology …, 2023 - Elsevier
Monkeypox (MPXV) is a globally growing public health concern with 80,328 active cases and
53 deaths have been reported. No specific vaccine or drug is available for the treatment of …
53 deaths have been reported. No specific vaccine or drug is available for the treatment of …
Using a classical potential as an efficient importance function for sampling from an ab initio potential
In this paper the ab initio potential of mean force for the formic acid–water system is calculated
in a Monte Carlo simulation using a classical fluctuating charge molecular mechanics …
in a Monte Carlo simulation using a classical fluctuating charge molecular mechanics …