User profiles for E. D. Amir

El-ad David Amir

Astrolabe Diagnostics, Inc.
Verified email at astrolabediagnostics.com
Cited by 10452

Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum

SC Bendall, EF Simonds, P Qiu, ED Amir, PO Krutzik… - Science, 2011 - science.org
Flow cytometry is an essential tool for dissecting the functional complexity of hematopoiesis.
We used single-cell “mass cytometry” to examine healthy human bone marrow, measuring …

viSNE enables visualization of high dimensional single-cell data and reveals phenotypic heterogeneity of leukemia

ED Amir, KL Davis, MD Tadmor, EF Simonds… - Nature …, 2013 - nature.com
New high-dimensional, single-cell technologies offer unprecedented resolution in the analysis
of heterogeneous tissues. However, because these technologies can measure dozens of …

[HTML][HTML] Innate immune landscape in early lung adenocarcinoma by paired single-cell analyses

Y Lavin, S Kobayashi, A Leader, ED Amir, N Elefant… - Cell, 2017 - cell.com
To guide the design of immunotherapy strategies for patients with early stage lung tumors,
we developed a multiscale immune profiling strategy to map the immune landscape of early …

[PDF][PDF] Single-cell trajectory detection uncovers progression and regulatory coordination in human B cell development

SC Bendall, KL Davis, ED Amir, MD Tadmor… - Cell, 2014 - cell.com
Tissue regeneration is an orchestrated progression of cells from an immature state to a
mature one, conventionally represented as distinctive cell subsets. A continuum of transitional …

Single-cell immune landscape of human atherosclerotic plaques

…, NF Fernandez, A Chudnovskiy, ED Amir… - Nature medicine, 2019 - nature.com
Atherosclerosis is driven by multifaceted contributions of the immune system within the
circulation and at vascular focal sites. However, specific characteristics of dysregulated immune …

Palladium-based mass tag cell barcoding with a doublet-filtering scheme and single-cell deconvolution algorithm

ER Zunder, R Finck, GK Behbehani, ED Amir… - Nature protocols, 2015 - nature.com
Mass-tag cell barcoding (MCB) labels individual cell samples with unique combinatorial
barcodes, after which they are pooled for processing and measurement as a single multiplexed …

Multimodal mapping of the tumor and peripheral blood immune landscape in human pancreatic cancer

…, S The, L Delrosario, J Lazarus, ED Amir… - Nature Cancer, 2020 - nature.com
Pancreatic ductal adenocarcinoma (PDA) is characterized by an immune-suppressive tumor
microenvironment that renders it largely refractory to immunotherapy. We implemented a …

[HTML][HTML] Host-protozoan interactions protect from mucosal infections through activation of the inflammasome

…, R Remark, I Mogno, R Ng, S Gnjatic, ED Amir… - Cell, 2016 - cell.com
While conventional pathogenic protists have been extensively studied, there is an
underappreciated constitutive protist microbiota that is an integral part of the vertebrate microbiome. …

Highly multiplexed profiling of single-cell effector functions reveals deep functional heterogeneity in response to pathogenic ligands

…, K Brower, L Han, ED Amir… - Proceedings of the …, 2015 - National Acad Sciences
Despite recent advances in single-cell genomic, transcriptional, and mass-cytometric profiling,
it remains a challenge to collect highly multiplexed measurements of secreted proteins …

[HTML][HTML] Development of a comprehensive antibody staining database using a standardized analytics pipeline

ED Amir, B Lee, P Badoual, M Gordon, XV Guo… - Frontiers in …, 2019 - frontiersin.org
Large-scale immune monitoring experiments (such as clinical trials) are a promising direction
for biomarker discovery and responder stratification in immunotherapy. Mass cytometry is …