[HTML][HTML] Altered TMPRSS2 usage by SARS-CoV-2 Omicron impacts infectivity and fusogenicity

…, J Bradley, JAG Briggs, J Choi, E Madissoon… - Nature, 2022 - nature.com
The SARS-CoV-2 Omicron BA.1 variant emerged in 2021 1 and has multiple mutations in its
spike protein 2 . Here we show that the spike protein of Omicron has a higher affinity for …

[HTML][HTML] An integrated cell atlas of the lung in health and disease

…, DC Strobl, TE Gillett, L Zappia, E Madissoon… - Nature Medicine, 2023 - nature.com
Single-cell technologies have transformed our understanding of human tissues. Yet, studies
typically capture only a limited number of donors and disagree on cell type definitions. …

[HTML][HTML] Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics

…, S Lukassen, W Luo, H Maatz, E Madissoon… - Nature medicine, 2021 - nature.com
Angiotensin-converting enzyme 2 (ACE2) and accessory proteases (TMPRSS2 and CTSL)
are needed for severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) cellular entry…

[HTML][HTML] Local and systemic responses to SARS-CoV-2 infection in children and adults

…, E Madissoon, JL Barnes, J Allen-Hyttinen, E Kilich… - Nature, 2022 - nature.com
It is not fully understood why COVID-19 is typically milder in children 1 , 2 – 3 . Here, to examine
the differences between children and adults in their response to SARS-CoV-2 infection, …

Integrated analyses of single-cell atlases reveal age, gender, and smoking status associations with cell type-specific expression of mediators of SARS-CoV-2 viral …

…, J Lu, LS Ludwig, W Luo, H Maatz, E Madissoon… - BioRxiv, 2020 - biorxiv.org
… (eg) PLISH and immunostaining in human adult lung alveoli for (e) ACE2 (white), TMPRSS2
(green) and CTSL (red), (f) ACE2 (white), TMPRSS2 (green) and HTII-280 (red), (g) ACE2 (…

[HTML][HTML] A spatially resolved atlas of the human lung characterizes a gland-associated immune niche

E Madissoon, AJ Oliver, V Kleshchevnikov… - Nature Genetics, 2023 - nature.com
e, Cell type capture is affected by protocol and location. Cell type proportion analysis with
fold changes and LTSR score for all cell type groups with regard to the material, protocol and …

[HTML][HTML] scRNA-seq assessment of the human lung, spleen, and esophagus tissue stability after cold preservation

E Madissoon, A Wilbrey-Clark, RJ Miragaia… - Genome biology, 2020 - Springer
Background The Human Cell Atlas is a large international collaborative effort to map all cell
types of the human body. Single-cell RNA sequencing can generate high-quality data for the …

Molecular phenotyping reveals the identity of Barrett's esophagus and its malignant transition

…, N Eling, A Wilbrey-Clark, E Madissoon… - Science, 2021 - science.org
… (E) Schematics of somatic mutation analysis and pairwise comparison from 60× WGS
data. (F) Pairwise comparison of BE versus NE and BE versus NG in two BE patients; their …

[HTML][HTML] The discovAIR project: a roadmap towards the Human Lung Cell Atlas

MD Luecken, LE Zaragosi, E Madissoon… - European …, 2022 - Eur Respiratory Soc
The Human Cell Atlas (HCA) consortium aims to establish an atlas of all organs in the healthy
human body at single-cell resolution to increase our understanding of basic biological …

[PDF][PDF] A human fetal lung cell atlas uncovers proximal-distal gradients of differentiation and key regulators of epithelial fates

…, A Wilbrey-Clark, E Madissoon, ZK Tuong, E Dann… - Cell, 2022 - cell.com
… -stalk to late-airway progenitor to club cells (Figure S5E), although the oldest tip and stalk
cells included in this analysis may produce alveolar lineages (Figures S5E’, 3C, 3E, S6A, and …