… e, Estimated copy numbers of proteins contained in the assay library and detected with
diaPASEF in triplicate single runs. f, Cumulative number of missing protein quantification data …

… Here we used E. coli and yeast peptides from the same instrument in the same publication.
For these regular peptides the CCS model achieved an R 2 > 0.98 of the predicted and …

Plasma and serum are rich sources of information regarding an individual's health state,
and protein tests inform medical decision making. Despite major investments, few new …

… e Distribution of 559,979 unique data points, including modified sequence and charge
state, in the CCS vs. m/z space color-coded by charge state. Density distributions for m/z and …

… Julia Patricia Schessner and Eugenia Voytik contributed equally to this work. … Julia Patricia
Schessner and Eugenia Voytik devised and wrote the manuscript. All authors contributed …

… two-species benchmarking dataset, in which E. coli proteins change their abundance by a
… e Venn Diagram of all quantified proteins shows good agreement across all search engines…

Data-independent acquisition (DIA) methods have become increasingly attractive in mass
spectrometry–based proteomics because they enable high data completeness and a wide …

… e, Distribution of estimated copy numbers of proteins contained in the assay library and
detected with diaPASEF in triplicate single runs. f, Completeness of the protein quantification …

High-resolution MS-based proteomics generates large amounts of data, even in the standard
LC–tandem MS configuration. Adding an ion mobility dimension vastly increases the …

… The authors wish it to be known that, in their opinion, the Eugenia Voytik and Isabell Bludau
… The authors wish it to be known that, in their opinion, the Eugenia Voytik and Isabell Bludau …