User profiles for Ebbe S. Andersen

Ebbe Sloth Andersen

Associate Professor, Aarhus University
Verified email at inano.au.dk
Cited by 4653

Self-assembly of a nanoscale DNA box with a controllable lid

ES Andersen, M Dong, MM Nielsen, K Jahn… - Nature, 2009 - nature.com
The unique structural motifs and self-recognition properties of DNA can be exploited to generate
self-assembling DNA nanostructures of specific shapes using a ‘bottom-up’ approach 1 …

A single-stranded architecture for cotranscriptional folding of RNA nanostructures

C Geary, PWK Rothemund, ES Andersen - Science, 2014 - science.org
Artificial DNA and RNA structures have been used as scaffolds for a variety of nanoscale
devices. In comparison to DNA structures, RNA structures have been limited in size, but they …

DNA origami design of dolphin-shaped structures with flexible tails

ES Andersen, M Dong, MM Nielsen, K Jahn… - ACS …, 2008 - ACS Publications
The DNA origami method allows the folding of long, single-stranded DNA sequences into
arbitrary two-dimensional structures by a set of designed oligonucleotides. The method has …

RNA origami design tools enable cotranscriptional folding of kilobase-sized nanoscaffolds

…, EKS McRae, PWK Rothemund, ES Andersen - Nature …, 2021 - nature.com
RNA origami is a framework for the modular design of nanoscaffolds that can be folded from
a single strand of RNA and used to organize molecular components with nanoscale …

Construction of a 4 zeptoliters switchable 3D DNA box origami

…, AH Okholm, DH Schaffert, ES Andersen… - ACS …, 2012 - ACS Publications
The DNA origami technique is a recently developed self-assembly method that allows
construction of 3D objects at the nanoscale for various applications. In the current study we report …

[HTML][HTML] Development of a genetically encodable FRET system using fluorescent RNA aptamers

…, G Grossi, KV Gothelf, ES Andersen - Nature …, 2018 - nature.com
Fluorescent RNA aptamers are useful as markers for tracking RNA molecules inside cells
and for creating biosensor devices. Förster resonance energy transfer (FRET) based on …

Utilizing RNA origami scaffolds in Saccharomyces cerevisiae for dCas9-mediated transcriptional control

…, MTA Nguyen, ES Andersen - Nucleic Acids …, 2022 - academic.oup.com
Ebbe S Andersen Ebbe S Andersen … (termed sgRNAOs) and attempt to modulate the
expression of genetic targets in S. cerevisiae yeast. The sgRNAOs have the capacity to bind to …

RNA target highlights in CASP15: Evaluation of predicted models by structure providers

RC Kretsch, ES Andersen, JM Bujnicki… - Proteins: Structure …, 2023 - Wiley Online Library
The first RNA category of the Critical Assessment of Techniques for Structure Prediction
competition was only made possible because of the scientists who provided experimental …

Branched kissing loops for the construction of diverse RNA homooligomeric nanostructures

…, G Chen, Y Shao, M Li, C Mao, ES Andersen… - Nature Chemistry, 2020 - nature.com
In biological systems, large and complex structures are often assembled from multiple simpler
identical subunits. This strategy—homooligomerization—allows efficient genetic encoding …

[HTML][HTML] Role of the trans-activation response element in dimerization of HIV-1 RNA

ES Andersen, SA Contera, B Knudsen… - Journal of Biological …, 2004 - ASBMB
The HIV-1 genome consists of two identical RNA strands that are linked together through
non-covalent interactions. A major determinant for efficient dimerization of the two RNA strands …