User profiles for Eivind Hovig

Eivind Hovig

Professor.1. Centre for bioinformatics. Dept. of Informatics, Univ of Oslo. 2. Oslo Univ. Hosp.
Verified email at ifi.uio.no
Cited by 17356

[HTML][HTML] Ten simple rules for reproducible computational research

…, A Nekrutenko, J Taylor, E Hovig - PLoS computational …, 2013 - journals.plos.org
Replication is the cornerstone of a cumulative science [1]. However, new tools and
technologies, massive amounts of data, interdisciplinary approaches, and the complexity of the …

A literature network of human genes for high-throughput analysis of gene expression

TK Jenssen, A Lægreid, J Komorowski, E Hovig - Nature genetics, 2001 - nature.com
We have carried out automated extraction of explicit and implicit biomedical knowledge from
publicly available gene and text databases to create a gene-to-gene co-citation network for …

A uniform system for the annotation of vertebrate microRNA genes and the evolution of the human microRNAome

…, LF Sempere, K Flatmark, E Hovig… - Annual review of …, 2015 - annualreviews.org
Although microRNAs (miRNAs) are among the most intensively studied molecules of the past
20 years, determining what is and what is not a miRNA has not been straightforward. Here, …

Somatic Point Mutations in the p53 Gene of Human Tumors and Cell Lines: Updated Compilation

…, B Shomer, M Greenblatt, T Soussi, E Hovig… - Nucleic acids …, 1996 - academic.oup.com
In 1994 we described a list of ∼2500 point mutations in the p53 gene of human tumors and
cell lines which we had compiled from the published literature and made available …

Cancer risk and survival in path_MMR carriers by gene and gender up to 75 years of age: a report from the Prospective Lynch Syndrome Database

…, J Jeffries, HFA Vasen, J Burn, S Nakken, E Hovig… - Gut, 2018 - gut.bmj.com
Background Most patients with path_MMR gene variants (Lynch syndrome (LS)) now survive
both their first and subsequent cancers, resulting in a growing number of older patients with …

Cancer incidence and survival in Lynch syndrome patients receiving colonoscopic and gynaecological surveillance: first report from the prospective Lynch syndrome …

…, J Jeffries, H Vasen, J Burn, S Nakken, E Hovig… - Gut, 2017 - gut.bmj.com
Objective Estimates of cancer risk and the effects of surveillance in Lynch syndrome have
been subject to bias, partly through reliance on retrospective studies. We sought to establish …

[HTML][HTML] Cancer risks by gene, age, and gender in 6350 carriers of pathogenic mismatch repair variants: findings from the Prospective Lynch Syndrome Database

…, DG Evans, J Burn, M Greenblatt, E Hovig… - Genetics in …, 2020 - nature.com
Purpose Pathogenic variants affecting MLH1, MSH2, MSH6, and PMS2 cause Lynch syndrome
and result in different but imprecisely known cancer risks. This study aimed to provide …

[HTML][HTML] A comprehensive assessment of somatic mutation detection in cancer using whole-genome sequencing

…, S Derdak, B Hutter, MD Eldridge, E Hovig… - Nature …, 2015 - nature.com
As whole-genome sequencing for cancer genome analysis becomes a clinical tool, a full
understanding of the variables affecting sequencing analysis output is required. Here using …

Database of p53 gene somatic mutations in human tumors and cell lines: updated compilation and future prospects

…, M Hollstein, M Greenblatt, E Hovig… - Nucleic acids …, 1997 - academic.oup.com
In recent years, there has been an exponential increase in the number of p53 mutations
identified in human cancers. The p53 mutation database consists of a list of point mutations in …

Methods that remove batch effects while retaining group differences may lead to exaggerated confidence in downstream analyses

V Nygaard, EA Rødland, E Hovig - Biostatistics, 2016 - academic.oup.com
Removal of, or adjustment for, batch effects or center differences is generally required when
such effects are present in data. In particular, when preparing microarray gene expression …