User profiles for Eivind Hovig
Eivind HovigProfessor.1. Centre for bioinformatics. Dept. of Informatics, Univ of Oslo. 2. Oslo Univ. Hosp. Verified email at ifi.uio.no Cited by 17356 |
[HTML][HTML] Ten simple rules for reproducible computational research
Replication is the cornerstone of a cumulative science [1]. However, new tools and
technologies, massive amounts of data, interdisciplinary approaches, and the complexity of the …
technologies, massive amounts of data, interdisciplinary approaches, and the complexity of the …
A literature network of human genes for high-throughput analysis of gene expression
TK Jenssen, A Lægreid, J Komorowski, E Hovig - Nature genetics, 2001 - nature.com
We have carried out automated extraction of explicit and implicit biomedical knowledge from
publicly available gene and text databases to create a gene-to-gene co-citation network for …
publicly available gene and text databases to create a gene-to-gene co-citation network for …
A uniform system for the annotation of vertebrate microRNA genes and the evolution of the human microRNAome
…, LF Sempere, K Flatmark, E Hovig… - Annual review of …, 2015 - annualreviews.org
Although microRNAs (miRNAs) are among the most intensively studied molecules of the past
20 years, determining what is and what is not a miRNA has not been straightforward. Here, …
20 years, determining what is and what is not a miRNA has not been straightforward. Here, …
Somatic Point Mutations in the p53 Gene of Human Tumors and Cell Lines: Updated Compilation
In 1994 we described a list of ∼2500 point mutations in the p53 gene of human tumors and
cell lines which we had compiled from the published literature and made available …
cell lines which we had compiled from the published literature and made available …
Cancer risk and survival in path_MMR carriers by gene and gender up to 75 years of age: a report from the Prospective Lynch Syndrome Database
Background Most patients with path_MMR gene variants (Lynch syndrome (LS)) now survive
both their first and subsequent cancers, resulting in a growing number of older patients with …
both their first and subsequent cancers, resulting in a growing number of older patients with …
Cancer incidence and survival in Lynch syndrome patients receiving colonoscopic and gynaecological surveillance: first report from the prospective Lynch syndrome …
Objective Estimates of cancer risk and the effects of surveillance in Lynch syndrome have
been subject to bias, partly through reliance on retrospective studies. We sought to establish …
been subject to bias, partly through reliance on retrospective studies. We sought to establish …
[HTML][HTML] Cancer risks by gene, age, and gender in 6350 carriers of pathogenic mismatch repair variants: findings from the Prospective Lynch Syndrome Database
Purpose Pathogenic variants affecting MLH1, MSH2, MSH6, and PMS2 cause Lynch syndrome
and result in different but imprecisely known cancer risks. This study aimed to provide …
and result in different but imprecisely known cancer risks. This study aimed to provide …
[HTML][HTML] A comprehensive assessment of somatic mutation detection in cancer using whole-genome sequencing
…, S Derdak, B Hutter, MD Eldridge, E Hovig… - Nature …, 2015 - nature.com
As whole-genome sequencing for cancer genome analysis becomes a clinical tool, a full
understanding of the variables affecting sequencing analysis output is required. Here using …
understanding of the variables affecting sequencing analysis output is required. Here using …
Database of p53 gene somatic mutations in human tumors and cell lines: updated compilation and future prospects
…, M Hollstein, M Greenblatt, E Hovig… - Nucleic acids …, 1997 - academic.oup.com
In recent years, there has been an exponential increase in the number of p53 mutations
identified in human cancers. The p53 mutation database consists of a list of point mutations in …
identified in human cancers. The p53 mutation database consists of a list of point mutations in …
Methods that remove batch effects while retaining group differences may lead to exaggerated confidence in downstream analyses
V Nygaard, EA Rødland, E Hovig - Biostatistics, 2016 - academic.oup.com
Removal of, or adjustment for, batch effects or center differences is generally required when
such effects are present in data. In particular, when preparing microarray gene expression …
such effects are present in data. In particular, when preparing microarray gene expression …