User profiles for Elizabeth Purdom

Elizabeth Purdom

Associate Professor of Statistics, UC Berkeley
Verified email at stat.berkeley.edu
Cited by 43032

Diversity of the human intestinal microbial flora

PB Eckburg, EM Bik, CN Bernstein, E Purdom… - science, 2005 - science.org
The human endogenous intestinal microflora is an essential “organ” in providing nourishment,
regulating epithelial development, and instructing innate immunity; yet, surprisingly, basic …

[PDF][PDF] Integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR, and NF1

RGW Verhaak, KA Hoadley, E Purdom, V Wang, Y Qi… - Cancer cell, 2010 - cell.com
The Cancer Genome Atlas Network recently cataloged recurrent genomic abnormalities in
glioblastoma multiforme (GBM). We describe a robust gene expression-based molecular …

[HTML][HTML] Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments

JH Bullard, E Purdom, KD Hansen, S Dudoit - BMC bioinformatics, 2010 - Springer
High-throughput sequencing technologies, such as the Illumina Genome Analyzer, are powerful
new tools for investigating a wide range of biological and medical questions. Statistical …

[HTML][HTML] Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics

…, RB Fletcher, D Das, J Ngai, N Yosef, E Purdom… - BMC genomics, 2018 - Springer
Background Single-cell transcriptomics allows researchers to investigate complex communities
of heterogeneous cells. It can be applied to stem cells and their descendants in order to …

Molecular analysis of the bacterial microbiota in the human stomach

…, SR Gill, KE Nelson, EA Purdom… - Proceedings of the …, 2006 - National Acad Sciences
The microbiota of the human stomach and the influence of Helicobacter pylori colonization
on its composition remain largely unknown. We characterized bacterial diversity within the …

Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia

…, YG Choi, D Risso, S Dudoit, E Purdom… - Science …, 2020 - science.org
Altered olfactory function is a common symptom of COVID-19, but its etiology is unknown. A
key question is whether SARS-CoV-2 (CoV-2) – the causal agent in COVID-19 – affects …

Subtype and pathway specific responses to anticancer compounds in breast cancer

…, F Pepin, Y Guan, E Purdom… - Proceedings of the …, 2012 - National Acad Sciences
Breast cancers are comprised of molecularly distinct subtypes that may respond differently to
pathway-targeted therapies now under development. Collections of breast cancer cell lines …

Drought and host selection influence bacterial community dynamics in the grass root microbiome

D Naylor, S DeGraaf, E Purdom… - The ISME …, 2017 - academic.oup.com
Root endophytes have been shown to have important roles in determining host fitness under
periods of drought stress, and yet the effect of drought on the broader root endosphere …

[HTML][HTML] Co-occurrence networks reveal more complexity than community composition in resistance and resilience of microbial communities

…, M Madera, J Hollingsworth, L Chen, E Purdom… - Nature …, 2022 - nature.com
Plant response to drought stress involves fungi and bacteria that live on and in plants and in
the rhizosphere, yet the stability of these myco- and micro-biomes remains poorly …

[HTML][HTML] Genome-resolved metagenomics reveals role of iron metabolism in drought-induced rhizosphere microbiome dynamics

…, JA Dahlberg, ML Guerinot, E Purdom… - Nature …, 2021 - nature.com
Recent studies have demonstrated that drought leads to dramatic, highly conserved shifts in
the root microbiome. At present, the molecular mechanisms underlying these responses …