[HTML][HTML] Mesencephalic origin of the inferior lobe in zebrafish

S Bloch, M Thomas, I Colin, S Galant, E Machado… - BMC biology, 2019 - Springer
Background Although the overall brain organization is shared in vertebrates, there are
significant differences within subregions among different groups, notably between Sarcopterygii (…

X-FaCT: Xenopus-fast clearing technique

…, S Le Mével, A Jenett, L Rivière, E Machado… - Xenopus: Methods and …, 2018 - Springer
Accessibility and imaging of cell compartments in big specimens are crucial for cellular
biological research but also a matter of contention. Confocal imaging and tissue clearing on …

[HTML][HTML] ZeBraInspector, a platform for the automated segmentation and analysis of body and brain volumes in whole 5 days post-fertilization zebrafish following …

S Lempereur, E Machado, F Licata, M Simion… - Developmental …, 2022 - Elsevier
In recent years, the zebrafish has become a well-established laboratory model. We describe
here the ZeBraInspector (ZBI) platform for high-content 3D imaging (HCI) of 5 days post-…

zPACT: tissue clearing and immunohistochemistry on juvenile zebrafish brain

…, E De Job, L Rivière, JM Hermel, E Machado… - Bio …, 2017 - bio-protocol.org
In studies of brain function, it is essential to understand the underlying neuro-architecture.
Very young zebrafish larvae are widely used for neuroarchitecture studies, due to their size …

ZeBraInspector, a whole organism screening platform enabling volumetric analysis of zebrafish brain white matter

S Lempereur, E Machado, F Licata, L Buzer… - bioRxiv, 2020 - biorxiv.org
In recent years, zebrafish have become well established for the study of fundamental biology,
toxicology and drug discovery. Here we propose fast, standardized protocols for high-…

The information system of the French Peatland Observation Service: Service National d'Observation Tourbières–A valuable tool to assess the impact of global …

…, A Lhosmot, Q Li, E Machado Da Silva… - Hydrological …, 2021 - Wiley Online Library
Mitigating and adapting to global changes requires a better understanding of the response
of the Biosphere to these environmental variations. Human disturbances and their effects act …

Automated segmentation of thick confocal microscopy 3D images for the measurement of white matter volumes in zebrafish brains

S Lempereur, A Jenett, E Machado… - Mathematical …, 2020 - degruyter.com
Tissue clearing methods have boosted the microscopic observations of thick samples such
as whole-mount mouse or zebrafish. Even with the best tissue clearing methods, specimens …

Xenopus

K Vleminckx - Methods in molecular biology - Springer
The last couple of years have seen unbiased and systematic analysis of gene mutations,
genomic rearrangements, and RNA expression in clinical practice, for instance in patients …

Non-thalamic origin of zebrafish sensory nuclei implies convergent evolution of visual pathways in amniotes and teleosts

S Bloch, H Hagio, M Thomas, A Heuzé, JM Hermel… - Elife, 2020 - elifesciences.org
… Many thanks to the members of TEFOR, notably Elodie de Job, Laurie Rivie`re, Elodie
Machado, and Isabelle Robineau for their technical help. We also thank Matthieu Simion for his …

Non-thalamic origin of zebrafish sensory relay nucleus: convergent evolution of visual pathways in amniotes and teleosts

S Bloch, H Hagio, M Thomas, A Heuzé, JM Hermel… - BioRxiv, 2020 - biorxiv.org
… Many thanks to the members of TEFOR, notably Elodie de Job, Laurie Rivière, Elodie
Machado, and Isabelle Robineau for their technical help. We also thank Matthieu Simion for his …