Durable strategies to deploy plant resistance in agricultural landscapes

F Fabre, E Rousseau, L Mailleret, B Moury - New Phytologist, 2012 - Wiley Online Library
• The deployment of resistant crops often leads to the emergence of resistance‐breaking
pathogens that suppress the yield benefit provided by the resistance. Here, we theoretically …

[PDF][PDF] A defective viral genome strategy elicits broad protective immunity against respiratory viruses

…, A Nayak, JD Ernst, L Brodsky, E Brodsky, E Rousseau… - Cell, 2021 - cell.com
RNA viruses generate defective viral genomes (DVGs) that can interfere with replication of
the parental wild-type virus. To examine their therapeutic potential, we created a DVG by …

Epidemiological and evolutionary management of plant resistance: optimizing the deployment of cultivar mixtures in time and space in agricultural landscapes

F Fabre, E Rousseau, L Mailleret… - Evolutionary …, 2015 - Wiley Online Library
The management of genes conferring resistance to plant–pathogens should make it possible
to control epidemics (epidemiological perspective) and preserve resistance durability (…

[HTML][HTML] Experimental and mathematical insights on the interactions between poliovirus and a defective interfering genome

Y Shirogane, E Rousseau, J Voznica, Y Xiao… - PLoS …, 2021 - journals.plos.org
During replication, RNA viruses accumulate genome alterations, such as mutations and
deletions. The interactions between individual variants can determine the fitness of the virus …

Virus epidemics, plant-controlled population bottlenecks and the durability of plant resistance

E Rousseau, M Bonneault, F Fabre… - … of the Royal …, 2019 - royalsocietypublishing.org
Plant qualitative resistances to viruses are natural exhaustible resources that can be impaired
by the emergence of resistance-breaking (RB) virus variants. Mathematical modelling can …

[HTML][HTML] Gut metagenome profile of the Nunavik Inuit youth is distinct from industrial and non-industrial counterparts

…, N Poliakova, P Ayotte, J Corbeil, E Rousseau - Communications …, 2022 - nature.com
Comparative metagenomics studies have highlighted differences in microbiome community
structure among human populations over diverse lifestyles and environments. With their …

[HTML][HTML] Estimating virus effective population size and selection without neutral markers

E Rousseau, B Moury, L Mailleret, R Senoussi… - PLoS …, 2017 - journals.plos.org
By combining high-throughput sequencing (HTS) with experimental evolution, we can observe
the within-host dynamics of pathogen variants of biomedical or ecological interest. We …

Impact of genetic drift, selection and accumulation level on virus adaptation to its host plants

E Rousseau, L Tamisier, F Fabre… - Molecular plant …, 2018 - Wiley Online Library
The efficiency of plant major resistance genes is limited by the emergence and spread of
resistance‐breaking mutants. Modulation of the evolutionary forces acting on pathogen …

[HTML][HTML] Learning self-supervised molecular representations for drug–drug interaction prediction

R Kpanou, P Dallaire, E Rousseau, J Corbeil - BMC bioinformatics, 2024 - Springer
Drug–drug interactions (DDI) are a critical concern in healthcare due to their potential to cause
adverse effects and compromise patient safety. Supervised machine learning models for …

Quantitative trait loci in pepper control the effective population size of two RNA viruses at inoculation

L Tamisier, E Rousseau, S Barraillé… - Journal of General …, 2017 - microbiologyresearch.org
Infection of plants by viruses is a complex process involving several steps: inoculation into
plant cells, replication in inoculated cells and plant colonization. The success of the different …