User profiles for Emily R. Davenport

Emily R. Davenport

Assistant Professor, Penn State University
Verified email at psu.edu
Cited by 4313

[PDF][PDF] Genetic determinants of the gut microbiome in UK twins

…, ER Davenport, M Beaumont, MA Jackson, R Knight… - Cell host & …, 2016 - cell.com
Studies in mice and humans have revealed intriguing associations between host genetics
and the microbiome. Here we report a 16S rRNA-based analysis of the gut microbiome in …

[HTML][HTML] The human microbiome in evolution

ER Davenport, JG Sanders, SJ Song, KR Amato… - BMC biology, 2017 - Springer
The trillions of microbes living in the gut—the gut microbiota—play an important role in
human biology and disease. While much has been done to explore its diversity, a full …

[HTML][HTML] Taxonomic classification of bacterial 16S rRNA genes using short sequencing reads: evaluation of effective study designs

O Mizrahi-Man, ER Davenport, Y Gilad - PloS one, 2013 - journals.plos.org
Massively parallel high throughput sequencing technologies allow us to interrogate the
microbial composition of biological samples at unprecedented resolution. The typical approach …

[HTML][HTML] Seasonal variation in human gut microbiome composition

ER Davenport, O Mizrahi-Man, K Michelini, LB Barreiro… - PloS one, 2014 - journals.plos.org
The composition of the human gut microbiome is influenced by many environmental factors.
Diet is thought to be one of the most important determinants, though we have limited …

The relationship between the human genome and microbiome comes into view

JK Goodrich, ER Davenport, AG Clark… - Annual review of …, 2017 - annualreviews.org
The body's microbiome, composed of microbial cells that number in the trillions, is involved
in human health and disease in ways that are just starting to emerge. The microbiome is …

Cross-species comparisons of host genetic associations with the microbiome

JK Goodrich, ER Davenport, JL Waters, AG Clark… - Science, 2016 - science.org
Recent studies in human populations and mouse models reveal notable congruences in gut
microbial taxa whose abundances are partly regulated by host genotype. Host genes …

[HTML][HTML] Genome-wide association studies of the human gut microbiota

ER Davenport, DA Cusanovich, K Michelini… - PloS one, 2015 - journals.plos.org
The bacterial composition of the human fecal microbiome is influenced by many lifestyle
factors, notably diet. It is less clear, however, what role host genetics plays in dictating the …

The human gut microbiome and health inequities

…, EK Costello, ER Davenport… - Proceedings of the …, 2021 - National Acad Sciences
Individuals who are minoritized as a result of race, sexual identity, gender, or socioeconomic
status experience a higher prevalence of many diseases. Understanding the biological …

[HTML][HTML] Heritable components of the human fecal microbiome are associated with visceral fat

…, JK Goodrich, MA Jackson, I Yet, ER Davenport… - Genome biology, 2016 - Springer
Background Variation in the human fecal microbiota has previously been associated with
body mass index (BMI). Although obesity is a global health burden, the accumulation of …

[HTML][HTML] A quick introduction to version control with Git and GitHub

JD Blischak, ER Davenport… - PLoS computational …, 2016 - journals.plos.org
Many scientists write code as part of their research. Just as experiments are logged in
laboratory notebooks, it is important to document the code you use for analysis. However, a few …