User profiles for Enakshi Sinniah

Enakshi Sinniah

University of Queensland
Verified email at uq.net.au
Cited by 81

[HTML][HTML] Elp2 mutations perturb the epitranscriptome and lead to a complex neurodevelopmental phenotype

…, M Kasherman, WJ Shim, E Sinniah… - Nature …, 2021 - nature.com
Intellectual disability (ID) and autism spectrum disorder (ASD) are the most common
neurodevelopmental disorders and are characterized by substantial impairment in intellectual and …

[PDF][PDF] Conserved epigenetic regulatory logic infers genes governing cell identity

WJ Shim, E Sinniah, J Xu, B Vitrinel, M Alexanian… - Cell systems, 2020 - cell.com
Determining genes that orchestrate cell differentiation in development and disease remains
a fundamental goal of cell biology. This study establishes a genome-wide metric based on …

Integrating single-cell genomics pipelines to discover mechanisms of stem cell differentiation

…, Y Sun, M Matsumoto, WJ Shim, E Sinniah… - Trends in Molecular …, 2021 - cell.com
Pluripotent stem cells underpin a growing sector that leverages their differentiation potential
for research, industry, and clinical applications. This review evaluates the landscape of …

Inferring cell diversity in single cell data using consortium-scale epigenetic data as a biological anchor for cell identity

Y Sun, WJ Shim, S Shen, E Sinniah… - Nucleic Acids …, 2023 - academic.oup.com
Methods for cell clustering and gene expression from single-cell RNA sequencing (scRNA-seq)
data are essential for biological interpretation of cell processes. Here, we present …

[PDF][PDF] Temporal perturbation of histone deacetylase activity reveals a requirement for HDAC1–3 in mesendoderm cell differentiation

E Sinniah, Z Wu, S Shen, M Naval-Sanchez, X Chen… - Cell Reports, 2022 - cell.com
Histone deacetylases (HDACs) are a class of enzymes that control chromatin state and
influence cell fate. We evaluated the chromatin accessibility and transcriptome dynamics of zinc-…

[CITATION][C] Understanding cell identity through the lens of genome-wide epigenetic repression

EA Sinniah - 2022 - espace.library.uq.edu.au
Elucidating genetic determinants underpinning cell identity in development and disease
remains a fundamental goal of cell biology. Though technological advances now enable the …

Comparative analysis of diverse cell states establishes an epigenetic basis for inferring regulatory genes governing cell identity

WJ Shim, E Sinniah, J Xu, B Vitrinel, M Alexanian… - bioRxiv, 2019 - biorxiv.org
Determining genes orchestrating cell identity and function in development and disease remains
a fundamental goal of cell biology. This study establishes a genome-wide metric based …

Stories in Molecular Medicine December 2021

SGS Verberk, M Jefri, E Sinniah, DC Liberti - Trends in Molecular Medicine, 2021 - cell.com
Life experiences influence our research and motivate us to ask scientific questions and shape
research goals. Here, Trends in Molecular Medicine authors share their journey in science…

Post-Transcriptional Regulation of Cell Identity in Development

B Vitrinel - 2021 - search.proquest.com
How do cells deal with their heritage when finding their own path? Multipotent cells, which
have the potential to give rise to more than one cell type in development display multilineage …

ExAtlas: An interactive online tool for meta-analysis of gene expression data

AA Sharov, D Schlessinger, MSH Ko - Journal of bioinformatics and …, 2015 - World Scientific
We have developed ExAtlas, an on-line software tool for meta-analysis and visualization of
gene expression data. In contrast to existing software tools, ExAtlas compares multi-…