User profiles for Engin Cukuroglu
Engin CukurogluGenome Institute of Singapore Verified email at gis.a-star.edu.sg Cited by 1966 |
Hot spots in protein–protein interfaces: Towards drug discovery
Identification of drug-like small molecules that alter protein–protein interactions might be a
key step in drug discovery. However, it is very challenging to find such molecules that target …
key step in drug discovery. However, it is very challenging to find such molecules that target …
[PDF][PDF] Midbrain-like organoids from human pluripotent stem cells contain functional dopaminergic and neuromelanin-producing neurons
Recent advances in 3D culture systems have led to the generation of brain organoids that
resemble different human brain regions; however, a 3D organoid model of the midbrain …
resemble different human brain regions; however, a 3D organoid model of the midbrain …
PRISM: a web server and repository for prediction of protein–protein interactions and modeling their 3D complexes
The PRISM web server enables fast and accurate prediction of protein–protein interactions (PPIs).
The prediction algorithm is knowledge-based. It combines structural similarity and …
The prediction algorithm is knowledge-based. It combines structural similarity and …
[PDF][PDF] A pan-cancer transcriptome analysis reveals pervasive regulation through alternative promoters
Most human protein-coding genes are regulated by multiple, distinct promoters, suggesting
that the choice of promoter is as important as its level of transcriptional activity. However, …
that the choice of promoter is as important as its level of transcriptional activity. However, …
Tumor-associated B cells and humoral immune response in head and neck squamous cell carcinoma
…, OG Siefer, CU Huebbers, E Cukuroglu… - …, 2019 - Taylor & Francis
B lymphocytes are important players in immune responses to cancer. However, their composition
and function in head and neck squamous cell carcinoma (HNSCC) has not been well …
and function in head and neck squamous cell carcinoma (HNSCC) has not been well …
HotRegion: a database of predicted hot spot clusters
Hot spots are energetically important residues at protein interfaces and they are not randomly
distributed across the interface but rather clustered. These clustered hot spots form hot …
distributed across the interface but rather clustered. These clustered hot spots form hot …
[PDF][PDF] Molecular features underlying neurodegeneration identified through in vitro modeling of genetically diverse Parkinson's disease patients
The fact that Parkinson's disease (PD) can arise from numerous genetic mutations suggests
a unifying molecular pathology underlying the various genetic backgrounds. To address this …
a unifying molecular pathology underlying the various genetic backgrounds. To address this …
[HTML][HTML] Non-redundant unique interface structures as templates for modeling protein interactions
Improvements in experimental techniques increasingly provide structural data relating to
protein-protein interactions. Classification of structural details of protein-protein interactions can …
protein-protein interactions. Classification of structural details of protein-protein interactions can …
[HTML][HTML] SRSF3 maintains transcriptome integrity in oocytes by regulation of alternative splicing and transposable elements
The RNA-binding protein SRSF3 (also known as SRp20) has critical roles in the regulation
of pre-mRNA splicing. Zygotic knockout of Srsf3 results in embryo arrest at the blastocyst …
of pre-mRNA splicing. Zygotic knockout of Srsf3 results in embryo arrest at the blastocyst …
B cells in esophago-gastric adenocarcinoma are highly differentiated, organize in tertiary lymphoid structures and produce tumor-specific antibodies
…, D Beutner, B Gathof, R Gilles, E Cukuroglu… - …, 2019 - Taylor & Francis
Tumor-infiltrating lymphocytes (TILs) are correlated to prognosis of several kinds of cancer.
Most studies focused on T cells, while the role of tumor-associated B cells (TABs) has only …
Most studies focused on T cells, while the role of tumor-associated B cells (TABs) has only …