User profiles for Eric J. Deeds
Eric J. DeedsProfessor, UCLA Verified email at ucla.edu Cited by 2315 |
Curvature in metabolic scaling
For more than three-quarters of a century it has been assumed 1 that basal metabolic rate
increases as body mass raised to some power p. However, there is no broad consensus …
increases as body mass raised to some power p. However, there is no broad consensus …
Machine learning classification can reduce false positives in structure-based virtual screening
…, EJ Deeds, J Karanicolas - Proceedings of the …, 2020 - National Acad Sciences
With the recent explosion in the size of libraries available for screening, virtual screening is
positioned to assume a more prominent role in early drug discovery’s search for active …
positioned to assume a more prominent role in early drug discovery’s search for active …
Robust protein–protein interactions in crowded cellular environments
The capacity of proteins to interact specifically with one another underlies our conceptual
understanding of how living systems function. Systems-level study of specificity in protein–…
understanding of how living systems function. Systems-level study of specificity in protein–…
A novel metric reveals previously unrecognized distortion in dimensionality reduction of scRNA-Seq data
High-dimensional data are becoming increasingly common in nearly all areas of science.
Developing approaches to analyze these data and understand their meaning is a pressing …
Developing approaches to analyze these data and understand their meaning is a pressing …
[HTML][HTML] Sizing up allometric scaling theory
Metabolic rate, heart rate, lifespan, and many other physiological properties vary with body
mass in systematic and interrelated ways. Present empirical data suggest that these scaling …
mass in systematic and interrelated ways. Present empirical data suggest that these scaling …
Fundamental trade-offs between information flow in single cells and cellular populations
Signal transduction networks allow eukaryotic cells to make decisions based on information
about intracellular state and the environment. Biochemical noise significantly diminishes the …
about intracellular state and the environment. Biochemical noise significantly diminishes the …
[PDF][PDF] Crosstalk and the evolution of specificity in two-component signaling
MA Rowland, EJ Deeds - Biophysical Journal, 2014 - cell.com
Two-component Signaling (TCS) serves as the dominant signaling modality in bacteria. A
typical pathway includes a sensor Histidine Kinase (HK) that phosphorylates a Response …
typical pathway includes a sensor Histidine Kinase (HK) that phosphorylates a Response …
Intrinsic limits of information transmission in biochemical signalling motifs
R Suderman, EJ Deeds - Interface Focus, 2018 - royalsocietypublishing.org
All living things have evolved to sense changes in their environment in order to respond in
adaptive ways. At the cellular level, these sensing systems generally involve receptor …
adaptive ways. At the cellular level, these sensing systems generally involve receptor …
A simple physical model for scaling in protein-protein interaction networks
EJ Deeds, O Ashenberg… - Proceedings of the …, 2006 - National Acad Sciences
It has recently been demonstrated that many biological networks exhibit a “scale-free” topology,
for which the probability of observing a node with a certain number of edges (k) follows a …
for which the probability of observing a node with a certain number of edges (k) follows a …
Docking-based long timescale simulation of cell-size protein systems at atomic resolution
…, PJ Kundrotas, EJ Deeds - Proceedings of the …, 2022 - National Acad Sciences
Computational methodologies are increasingly addressing modeling of the whole cell at the
molecular level. Proteins and their interactions are the key component of cellular processes. …
molecular level. Proteins and their interactions are the key component of cellular processes. …