[HTML][HTML] Large scale library generation for high throughput sequencing

E Borgström, S Lundin, J Lundeberg - PloS one, 2011 - journals.plos.org
Background Large efforts have recently been made to automate the sample preparation
protocols for massively parallel sequencing in order to match the increasing instrument …

[PDF][PDF] Transplanted bone marrow-derived cells contribute to human adipogenesis

M Ryden, M Uzunel, JL Hård, E Borgström, JE Mold… - Cell metabolism, 2015 - cell.com
Because human white adipocytes display a high turnover throughout adulthood, a
continuous supply of precursor cells is required to maintain adipogenesis. Bone marrow (BM)-derived …

[HTML][HTML] Comparison of whole genome amplification techniques for human single cell exome sequencing

E Borgström, M Paterlini, JE Mold, J Frisen… - PloS one, 2017 - journals.plos.org
Background Whole genome amplification (WGA) is currently a prerequisite for single cell
whole genome or exome sequencing. Depending on the method used the rate of artifact …

[HTML][HTML] Phasing of single DNA molecules by massively parallel barcoding

E Borgström, D Redin, S Lundin, E Berglund… - Nature …, 2015 - nature.com
High-throughput sequencing platforms mainly produce short-read data, resulting in a loss of
phasing information for many of the genetic variants analysed. For certain applications, it is …

[HTML][HTML] Conbase: a software for unsupervised discovery of clonal somatic mutations in single cells through read phasing

…, I Demirci, M Paterlini, P Reu, E Borgström… - Genome biology, 2019 - Springer
Accurate variant calling and genotyping represent major limiting factors for downstream
applications of single-cell genomics. Here, we report Conbase for the identification of somatic …

[HTML][HTML] High throughput barcoding method for genome-scale phasing

…, T Frick, H Aghelpasand, M Käller, E Borgström… - Scientific reports, 2019 - nature.com
The future of human genomics is one that seeks to resolve the entirety of genetic variation
through sequencing. The prospect of utilizing genomics for medical purposes require cost-…

[HTML][HTML] Dual spatially resolved transcriptomics for human host–pathogen colocalization studies in FFPE tissue sections

…, J Wu, T Várkonyi, T Glasz, A Kiss, E Borgström… - Genome Biology, 2023 - Springer
Technologies to study localized host–pathogen interactions are urgently needed. Here, we
present a spatial transcriptomics approach to simultaneously capture host and pathogen …

En långtidsstudie (1938—2004) av flyttfåglarnas ankomst till mellersta Värmland

E Borgström, L Schütt - Ornis svecica, 2006 - journals.lub.lu.se
We present first spring arrival dates of 64 bird species in Råda, Sweden (60 00'N, 13 36'E) for
the period 1938—2004 with almost all species covered more than 50 years. The trend was …

Lactate dehydrogenase as an indicator of severe illness in neonatal intensive care patients: a longitudinal cohort study

M Karlsson, KTK Dung, TL Thi, E Borgström… - Acta …, 2012 - Wiley Online Library
Aim: Lactate dehydrogenase (LDH) increases in several critical conditions that cause cell
damage and could potentially be used for early detection of serious illness in the newborn. Our …

Bladder cancer: allelic deletions at and around the retinoblastoma tumor suppressor gene in relation to stage and grade

…, H Wijkström, U Norming, E Borgström… - Clinical cancer …, 2000 - AACR
Inhibition of the retinoblastoma tumor suppressor gene (RB) is probably important in the
pathogenesis of urinary bladder cancer. Little information is available concerning allelic loss on …