User profiles for Ermes Botte

Ermes Botte

University of Pisa
Verified email at phd.unipi.it
Cited by 15

[HTML][HTML] A sense of proximity: Cell packing modulates oxygen consumption

E Botte, P Mancini, C Magliaro, A Ahluwalia - APL bioengineering, 2023 - pubs.aip.org
Accurately modeling oxygen transport and consumption is crucial to predict metabolic
dynamics in cell cultures and optimize the design of tissue and organ models. We present a …

Scaling of joint mass and metabolism fluctuations in in silico cell-laden spheroids

E Botte, F Biagini, C Magliaro… - Proceedings of the …, 2021 - National Acad Sciences
Variations and fluctuations are characteristic features of biological systems and are also
manifested in cell cultures. Here, we describe a computational pipeline for identifying the range …

A novel in silico tool for dose assessment in cell culture nanotoxicology

E Botte, P Vagaggini, J Costa, L Faccani… - Biomedical Science …, 2021 - pagepress.org
Dose assessment is essential for understanding the mechanisms triggering nanomaterial
toxicity in vitro and for meaningful translations to in vivo. We propose a novel computational …

Toward scalable in vitro models: a novel experimental and computational pipeline for the identification of cellular metabolic parameters

P Mancini, E Botte, C Magliaro… - Biomedical Science and …, 2021 - pagepress.org
Oxygen utilization by cells has a crucial role in the design of advanced in vitro models. The
aim of this study is to develop an experimental and computational pipeline for identifying …

An integrated pipeline and multi-model graphical user interface for accurate nano-dosimetry

E Botte, P Vagaggini, I Zanoni, D Gardini, AL Costa… - bioRxiv, 2021 - biorxiv.org
Accurate dosing of nanoparticles is crucial for risk assessment and for their safe use in medical
and other applications. Although it is well-known that nanoparticles sediment, diffuse and …

[HTML][HTML] A Millifluidic Chamber for Controlled Shear Stress Testing: Application to Microbial Cultures

F Biagini, E Botte, M Calvigioni, C De Maria… - Annals of Biomedical …, 2023 - Springer
In vitro platforms such as bioreactors and microfluidic devices are commonly designed to
engineer tissue models as well as to replicate the crosstalk between cells and microorganisms …

Teaching design standards and regulations on medical devices through a collaborative project-based learning approach

L Di Pietro, E Botte, G Riccardo, M Stefano… - International Journal of …, 2019 - arpi.unipi.it
The final goal a course of Medical Device Design is to convey the importance of multidisciplinary
approach in Biomedical Engineering (BME), where scientific and technical knowledge …

Ottimizzazione di un bioreattore per lo sviluppo di un modello in vitro del microbiota intestinale umano

E BOTTE - 2019 - etd.adm.unipi.it
L’obiettivo del presente lavoro di tesi è consistito nell’ottimizzazione e nella fabbricazione di
una camera di coltura che consenta di coltivare in vitro il microbiota intestinale umano e di …

Open-Source Medical Devices as Tools for Teaching Design, Standards and Regulations of Medical Technologies

L Di Pietro, GM Fortunato, E Botte, A Ahluwalia… - … Open-Source Medical …, 2022 - Springer
A multidisciplinary approach is necessary to design medical devices. Scientific and technical
knowledge has to address the clinical needs of patients and healthcare providers, and …

Variability in single-cell oxygen consumption kinetics

E Botte, Y Cui, C Magliaro, M Tenje, K Koren… - bioRxiv, 2023 - biorxiv.org
We combined microfabricated devices with multiparameter identification algorithms to probe
the variability in size-dependent oxygen consumption parameters of single human hepatic …