Bacterial transcriptomics: what is beyond the RNA horiz-ome?
M Güell, E Yus, M Lluch-Senar, L Serrano - Nature Reviews …, 2011 - nature.com
Over the past 3 years, bacterial transcriptomics has undergone a massive revolution.
Increased sequencing capacity and novel tools have made it possible to explore the bacterial …
Increased sequencing capacity and novel tools have made it possible to explore the bacterial …
[HTML][HTML] Engineering signal transduction pathways
C Kiel, E Yus, L Serrano - Cell, 2010 - cell.com
Cells respond to their environment by sensing signals and translating them into changes in
gene expression. In recent years, synthetic networks have been designed in both prokaryotic …
gene expression. In recent years, synthetic networks have been designed in both prokaryotic …
Proteome organization in a genome-reduced bacterium
…, T Norambuena, I Racke, V Rybin, A Schmidt, E Yus… - Science, 2009 - science.org
The genome of Mycoplasma pneumoniae is among the smallest found in self-replicating
organisms. To study the basic principles of bacterial proteome organization, we used tandem …
organisms. To study the basic principles of bacterial proteome organization, we used tandem …
Transcriptome complexity in a genome-reduced bacterium
To study basic principles of transcriptome organization in bacteria, we analyzed one of the
smallest self-replicating organisms, Mycoplasma pneumoniae. We combined strand-specific …
smallest self-replicating organisms, Mycoplasma pneumoniae. We combined strand-specific …
Impact of genome reduction on bacterial metabolism and its regulation
E Yus, T Maier, K Michalodimitrakis, V van Noort… - science, 2009 - science.org
To understand basic principles of bacterial metabolism organization and regulation, but
also the impact of genome size, we systematically studied one of the smallest bacteria, …
also the impact of genome size, we systematically studied one of the smallest bacteria, …
Cross‐talk between phosphorylation and lysine acetylation in a genome‐reduced bacterium
…, M O'Flaherty, V Rybin, A Schmeisky, E Yus… - Molecular systems …, 2012 - embopress.org
Protein post‐translational modifications (PTMs) represent important regulatory states that
when combined have been hypothesized to act as molecular codes and to generate a …
when combined have been hypothesized to act as molecular codes and to generate a …
Defining a minimal cell: essentiality of small ORF s and nc RNA s in a genome‐reduced bacterium
…, FJ O'Reilly, JAH Wodke, EB Unal, E Yus… - Molecular systems …, 2015 - embopress.org
Identifying all essential genomic components is critical for the assembly of minimal artificial
life. In the genome‐reduced bacterium Mycoplasma pneumoniae, we found that small ORF s (…
life. In the genome‐reduced bacterium Mycoplasma pneumoniae, we found that small ORF s (…
[HTML][HTML] Defined chromosome structure in the genome-reduced bacterium Mycoplasma pneumoniae
M Trussart, E Yus, S Martinez, D Bau… - Nature …, 2017 - nature.com
DNA-binding proteins are central regulators of chromosome organization; however, in
genome-reduced bacteria their diversity is largely diminished. Whether the chromosomes of such …
genome-reduced bacteria their diversity is largely diminished. Whether the chromosomes of such …
Dissecting the energy metabolism in Mycoplasma pneumoniae through genome‐scale metabolic modeling
…, M Lluch‐Senar, J Marcos, E Yus… - Molecular systems …, 2013 - embopress.org
Mycoplasma pneumoniae, a threatening pathogen with a minimal genome, is a model organism
for bacterial systems biology for which substantial experimental information is available. …
for bacterial systems biology for which substantial experimental information is available. …
Comprehensive quantitative modeling of translation efficiency in a genome‐reduced bacterium
Translation efficiency has been mainly studied by ribosome profiling, which only provides an
incomplete picture of translation kinetics. Here, we integrated the absolute quantifications of …
incomplete picture of translation kinetics. Here, we integrated the absolute quantifications of …