[HTML][HTML] Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics

…, C Smillie, KA Jagadeesh, ET Duong, E Fiskin… - Nature medicine, 2021 - nature.com
Angiotensin-converting enzyme 2 (ACE2) and accessory proteases (TMPRSS2 and CTSL)
are needed for severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) cellular entry…

[HTML][HTML] Structural basis for the recognition and degradation of host TRIM proteins by Salmonella effector SopA

E Fiskin, S Bhogaraju, L Herhaus, S Kalayil… - Nature …, 2017 - nature.com
The hallmark of Salmonella Typhimurium infection is an acute intestinal inflammatory
response, which is mediated through the action of secreted bacterial effector proteins. The pro-…

Integrated analyses of single-cell atlases reveal age, gender, and smoking status associations with cell type-specific expression of mediators of SARS-CoV-2 viral …

…, C Smilie, K Jagadeesh, ET Duong, E Fiskin… - BioRxiv, 2020 - biorxiv.org
The COVID-19 pandemic, caused by the novel coronavirus SARS-CoV-2, creates an urgent
need for identifying molecular mechanisms that mediate viral entry, propagation, and tissue …

[PDF][PDF] Insulin‐like growth factor 2 mRNA‐binding protein 1 (IGF2BP1) is an important protumorigenic factor in hepatocellular carcinoma

…, M Hämmerle, N Pazaitis, N Bley, E Fiskin… - …, 2014 - Wiley Online Library
Hepatocarcinogenesis is a stepwise process. It involves several genetic and epigenetic
alterations, eg, loss of tumor suppressor gene expression (TP53, PTEN, RB) as well as …

[PDF][PDF] Global analysis of host and bacterial ubiquitinome in response to Salmonella typhimurium infection

E Fiskin, T Bionda, I Dikic, C Behrends - Molecular Cell, 2016 - cell.com
Ubiquitination serves as a critical signal in the host immune response to infection. Many
pathogens have evolved strategies to exploit the ubiquitin (Ub) system to promote their own …

[HTML][HTML] Single-cell profiling of proteins and chromatin accessibility using PHAGE-ATAC

E Fiskin, CA Lareau, LS Ludwig, G Eraslan, F Liu… - Nature …, 2022 - nature.com
Multimodal measurements of single-cell profiles are proving increasingly useful for characterizing
cell states and regulatory mechanisms. In the present study, we developed PHAGE-…

Structural basis for phosphorylation-triggered autophagic clearance of Salmonella

VV Rogov, H Suzuki, E Fiskin, P Wild… - Biochemical …, 2013 - portlandpress.com
Selective autophagy is mediated by the interaction of autophagy modifiers and autophagy
receptors that also bind to ubiquitinated cargo. Optineurin is an autophagy receptor that plays …

Single-nucleus cross-tissue molecular reference maps toward understanding disease gene function

G Eraslan, E Drokhlyansky, S Anand, E Fiskin… - Science, 2022 - science.org
Understanding gene function and regulation in homeostasis and disease requires knowledge
of the cellular and tissue contexts in which genes are expressed. Here, we applied four …

[PDF][PDF] Posttranscriptional destabilization of the liver‐specific long noncoding RNA HULC by the IGF2 mRNA‐binding protein 1 (IGF2BP1)

…, T Gutschner, H Uckelmann, S Ozgur, E Fiskin… - …, 2013 - Wiley Online Library
Selected long noncoding RNAs (lncRNAs) have been shown to play important roles in
carcinogenesis. Although the cellular functions of these transcripts can be diverse, many lncRNAs …

Single-cell multi-omics of mitochondrial DNA disorders reveals dynamics of purifying selection across human immune cells

…, JM Verboon, JC Gutierrez, Y Yin, E Fiskin… - Nature …, 2023 - nature.com
Pathogenic mutations in mitochondrial DNA (mtDNA) compromise cellular metabolism,
contributing to cellular heterogeneity and disease. Diverse mutations are associated with diverse …