The bacterial sulfur cycle in expanding dysoxic and euxinic marine waters

DM van Vliet, FAB von Meijenfeldt… - Environmental …, 2021 - Wiley Online Library
Dysoxic marine waters (DMW, < 1 μM oxygen) are currently expanding in volume in the oceans,
which has biogeochemical, ecological and societal consequences on a global scale. In …

[HTML][HTML] Robust taxonomic classification of uncharted microbial sequences and bins with CAT and BAT

FAB Von Meijenfeldt, K Arkhipova, DD Cambuy… - Genome biology, 2019 - Springer
Current-day metagenomics analyses increasingly involve de novo taxonomic classification
of long DNA sequences and metagenome-assembled genomes. Here, we show that the …

[HTML][HTML] A social niche breadth score reveals niche range strategies of generalists and specialists

FAB von Meijenfeldt, P Hogeweg… - Nature Ecology & Evolution, 2023 - nature.com
Generalists can survive in many environments, whereas specialists are restricted to a single
environment. Although a classical concept in ecology, niche breadth has remained …

Bridging the membrane lipid divide: bacteria of the FCB group superphylum have the potential to synthesize archaeal ether lipids

L Villanueva, FA Bastiaan von Meijenfeldt… - The ISME …, 2021 - academic.oup.com
Archaea synthesize membranes of isoprenoid lipids that are ether-linked to glycerol-1-phosphate
(G1P), while Bacteria/Eukarya produce membranes consisting of fatty acids ester-…

[HTML][HTML] A metagenomic portrait of the microbial community responsible for two decades of bioremediation of poly-contaminated groundwater

…, TT Huisman, A Anocic, BL Snoek, FAB von Meijenfeldt… - Water Research, 2022 - Elsevier
Biodegradation of pollutants is a sustainable and cost-effective solution to groundwater
pollution. Here, we investigate microbial populations involved in biodegradation of poly-…

[HTML][HTML] Metagenomic characterization of the human intestinal microbiota in fecal samples from STEC-infected patients

F Gigliucci, FAB von Meijenfeldt, A Knijn… - Frontiers in cellular …, 2018 - frontiersin.org
The human intestinal microbiota is a homeostatic ecosystem with a remarkable impact on
human health and the disruption of this equilibrium leads to an increased susceptibility to …

Disentangling the lipid divide: Identification of key enzymes for the biosynthesis of membrane-spanning and ether lipids in Bacteria

…, A Abdala Asbun, M Koenen, FAB von Meijenfeldt… - Science …, 2022 - science.org
Bacterial membranes are composed of fatty acids (FAs) ester-linked to glycerol-3-phosphate,
while archaea have membranes made of isoprenoid chains ether-linked to glycerol-1-…

[PDF][PDF] Adsorption sequencing as a rapid method to link environmental bacteriophages to hosts

PA de Jonge, FAB von Meijenfeldt, AR Costa… - IScience, 2020 - cell.com
An important viromics challenge is associating bacteriophages to hosts. To address this, we
developed adsorption sequencing (AdsorpSeq), a readily implementable method to …

[HTML][HTML] Evolution of BACON domain tandem repeats in crAssphage and novel gut bacteriophage lineages

PA de Jonge, FAB von Meijenfeldt, LE van Rooijen… - Viruses, 2019 - mdpi.com
The human gut contains an expanse of largely unstudied bacteriophages. Among the most
common are crAss-like phages, which were predicted to infect Bacteriodetes hosts. …

[HTML][HTML] The gill-associated microbiome is the main source of wood plant polysaccharide hydrolases and secondary metabolite gene clusters in the mangrove …

TL Brito, AB Campos, FA Bastiaan von Meijenfeldt… - PLoS …, 2018 - journals.plos.org
Teredinidae are a family of highly adapted wood-feeding and wood-boring bivalves,
commonly known as shipworms, whose evolution is linked to the acquisition of cellulolytic …