User profiles for Fabio Vandin

Fabio Vandin

University of Padova
Verified email at unipd.it
Cited by 35922

Algorithms for detecting significantly mutated pathways in cancer

F Vandin, E Upfal, BJ Raphael - Journal of Computational Biology, 2011 - liebertpub.com
Recent genome sequencing studies have shown that the somatic mutations that drive
cancer development are distributed across a large number of genes. This mutational …

De novo discovery of mutated driver pathways in cancer

F Vandin, E Upfal, BJ Raphael - Genome research, 2012 - genome.cshlp.org
Next-generation DNA sequencing technologies are enabling genome-wide measurements
of somatic mutations in large numbers of cancer patients. A major challenge in the …

[HTML][HTML] CoMEt: a statistical approach to identify combinations of mutually exclusive alterations in cancer

MDM Leiserson, HT Wu, F Vandin, BJ Raphael - Genome biology, 2015 - Springer
Cancer is a heterogeneous disease with different combinations of genetic alterations
driving its development in different individuals. We introduce CoMEt, an algorithm to identify …

[HTML][HTML] Mutational landscape and significance across 12 major cancer types

C Kandoth, MD McLellan, F Vandin, K Ye, B Niu, C Lu… - Nature, 2013 - nature.com
The Cancer Genome Atlas (TCGA) has used the latest sequencing and analysis methods to
identify somatic variants across thousands of tumours. Here we present data and analytical …

The mutational landscape of lethal castration-resistant prostate cancer

…, JR Prensner, N Palanisamy, GA Ryslik, F Vandin… - Nature, 2012 - nature.com
Abstract Characterization of the prostate cancer transcriptome and genome has identified
chromosomal rearrangements and copy number gains and losses, including ETS gene family …

Pan-cancer network analysis identifies combinations of rare somatic mutations across pathways and protein complexes

MDM Leiserson, F Vandin, HT Wu, JR Dobson… - Nature …, 2015 - nature.com
Cancers exhibit extensive mutational heterogeneity, and the resulting long-tail phenomenon
complicates the discovery of genes and pathways that are significantly mutated in cancer. …

[HTML][HTML] Identifying driver mutations in sequenced cancer genomes: computational approaches to enable precision medicine

BJ Raphael, JR Dobson, L Oesper, F Vandin - Genome medicine, 2014 - Springer
High-throughput DNA sequencing is revolutionizing the study of cancer and enabling the
measurement of the somatic mutations that drive cancer development. However, the resulting …

Sizeshiftreg: a regularization method for improving size-generalization in graph neural networks

D Buffelli, P Liò, F Vandin - Advances in Neural Information …, 2022 - proceedings.neurips.cc
In the past few years, graph neural networks (GNNs) have become the de facto model of choice
for graph classification. While, from the theoretical viewpoint, most GNNs can operate on …

Discovery of mutated subnetworks associated with clinical data in cancer

F Vandin, P Clay, E Upfal, BJ Raphael - Biocomputing 2012, 2012 - World Scientific
A major goal of cancer sequencing projects is to identify genetic alterations that determine
clinical phenotypes, such as survival time or drug response. Somatic mutations in cancer are …

Attention-based deep learning framework for human activity recognition with user adaptation

D Buffelli, F Vandin - IEEE Sensors Journal, 2021 - ieeexplore.ieee.org
Sensor-based human activity recognition (HAR) requires to predict the action of a person
based on sensor-generated time series data. HAR has attracted major interest in the past few …