User profiles for Fabio Vandin
Fabio VandinUniversity of Padova Verified email at unipd.it Cited by 35922 |
Algorithms for detecting significantly mutated pathways in cancer
Recent genome sequencing studies have shown that the somatic mutations that drive
cancer development are distributed across a large number of genes. This mutational …
cancer development are distributed across a large number of genes. This mutational …
De novo discovery of mutated driver pathways in cancer
Next-generation DNA sequencing technologies are enabling genome-wide measurements
of somatic mutations in large numbers of cancer patients. A major challenge in the …
of somatic mutations in large numbers of cancer patients. A major challenge in the …
[HTML][HTML] CoMEt: a statistical approach to identify combinations of mutually exclusive alterations in cancer
Cancer is a heterogeneous disease with different combinations of genetic alterations
driving its development in different individuals. We introduce CoMEt, an algorithm to identify …
driving its development in different individuals. We introduce CoMEt, an algorithm to identify …
[HTML][HTML] Mutational landscape and significance across 12 major cancer types
The Cancer Genome Atlas (TCGA) has used the latest sequencing and analysis methods to
identify somatic variants across thousands of tumours. Here we present data and analytical …
identify somatic variants across thousands of tumours. Here we present data and analytical …
The mutational landscape of lethal castration-resistant prostate cancer
Abstract Characterization of the prostate cancer transcriptome and genome has identified
chromosomal rearrangements and copy number gains and losses, including ETS gene family …
chromosomal rearrangements and copy number gains and losses, including ETS gene family …
Pan-cancer network analysis identifies combinations of rare somatic mutations across pathways and protein complexes
Cancers exhibit extensive mutational heterogeneity, and the resulting long-tail phenomenon
complicates the discovery of genes and pathways that are significantly mutated in cancer. …
complicates the discovery of genes and pathways that are significantly mutated in cancer. …
[HTML][HTML] Identifying driver mutations in sequenced cancer genomes: computational approaches to enable precision medicine
High-throughput DNA sequencing is revolutionizing the study of cancer and enabling the
measurement of the somatic mutations that drive cancer development. However, the resulting …
measurement of the somatic mutations that drive cancer development. However, the resulting …
Sizeshiftreg: a regularization method for improving size-generalization in graph neural networks
In the past few years, graph neural networks (GNNs) have become the de facto model of choice
for graph classification. While, from the theoretical viewpoint, most GNNs can operate on …
for graph classification. While, from the theoretical viewpoint, most GNNs can operate on …
Discovery of mutated subnetworks associated with clinical data in cancer
A major goal of cancer sequencing projects is to identify genetic alterations that determine
clinical phenotypes, such as survival time or drug response. Somatic mutations in cancer are …
clinical phenotypes, such as survival time or drug response. Somatic mutations in cancer are …
Attention-based deep learning framework for human activity recognition with user adaptation
D Buffelli, F Vandin - IEEE Sensors Journal, 2021 - ieeexplore.ieee.org
Sensor-based human activity recognition (HAR) requires to predict the action of a person
based on sensor-generated time series data. HAR has attracted major interest in the past few …
based on sensor-generated time series data. HAR has attracted major interest in the past few …