[HTML][HTML] Spec2Vec: Improved mass spectral similarity scoring through learning of structural relationships

…, S Verhoeven, JH Spaaks, F Diblen… - PLoS computational …, 2021 - journals.plos.org
Spectral similarity is used as a proxy for structural similarity in many tandem mass
spectrometry (MS/MS) based metabolomics analyses such as library matching and molecular …

CT image segmentation of bone for medical additive manufacturing using a convolutional neural network

J Minnema, M van Eijnatten, W Kouw, F Diblen… - Computers in biology …, 2018 - Elsevier
Background The most tedious and time-consuming task in medical additive manufacturing (AM)
is image segmentation. The aim of the present study was to develop and train a …

[HTML][HTML] Earth System model evaluation tool (ESMValTool) v2. 0–technical overview

…, L Bock, B Brötz, L de Mora, F Diblen… - Geoscientific Model …, 2020 - gmd.copernicus.org
This paper describes the second major release of the Earth System Model Evaluation Tool (ESMValTool),
a community diagnostic and performance metrics tool for the evaluation of …

matchms-processing and similarity evaluation of mass spectrometry data

…, JJJ van der Hooft, S Rogers, A Belloum, F Diblen… - bioRxiv, 2020 - biorxiv.org
Mass spectrometry data is at the heart of numerable applications in the biomedical and life
sciences. With growing use of high throughput techniques researchers need to analyse larger …

Data multiplexing in radio interferometric calibration

S Yatawatta, F Diblen, H Spreeuw… - Monthly Notices of the …, 2018 - academic.oup.com
New and upcoming radio interferometers will produce unprecedented amount of data that
demand extremely powerful computers for processing. This is a limiting factor due to the large …

[HTML][HTML] SPOT: Open Source framework for scientific data repository and interactive visualization

F Diblen, J Attema, R Bakhshi, S Caron, L Hendriks… - SoftwareX, 2019 - Elsevier
spot is an open source and free visual data analytics tool for multi-dimensional data-sets. Its
web-based interface enables user to do a quick and interactive analysis of complex data. …

A stochastic LBFGS algorithm for radio interferometric calibration

…, L De Clercq, H Spreeuw, F Diblen - 2019 IEEE Data …, 2019 - ieeexplore.ieee.org
We present a stochastic, limited-memory Broyden Fletcher Goldfarb Shanno (LBFGS)
algorithm that is suitable for handling very large amounts of data. A direct application of this …

Radiation hardness of dsipm sensors in a proton therapy radiation environment

F Diblen, T Buitenhuis, T Solf… - … on Nuclear Science, 2017 - ieeexplore.ieee.org
In vivo verification of dose delivery in proton therapy by means of positron emission
tomography (PET) or prompt gamma imaging is mostly based on fast scintillation detectors. The …

[HTML][HTML] Interactive web-based visualization of multidimensional physical and astronomical data

F Diblen, L Hendriks, B Stienen, S Caron… - Frontiers in big …, 2021 - frontiersin.org
In this article, we propose expanding the use of scientific repositories such as Zenodo and
HEP data, in particular, to better study multiparametric solutions of physical models. The …

Adaptive ADMM in distributed radio interferometric calibration

S Yatawatta, F Diblen… - 2017 IEEE 7th International …, 2017 - ieeexplore.ieee.org
Distributed radio interferometric calibration based on consensus optimization has been
shown to improve the estimation of systematic errors in radio astronomical observations. The …