[PDF][PDF] Kinetic basis for DNA target specificity of CRISPR-Cas12a

I Strohkendl, FA Saifuddin, JR Rybarski, IJ Finkelstein… - Molecular cell, 2018 - cell.com
Class 2 CRISPR-Cas nucleases are programmable genome editing tools with promising
applications in human health and disease. However, DNA cleavage at off-target sites that …

[PDF][PDF] Massively parallel biophysical analysis of CRISPR-Cas complexes on next generation sequencing chips

…, JR Rybarski, KE Dillard, J Hussmann, FA Saifuddin… - Cell, 2017 - cell.com
CRISPR-Cas nucleoproteins target foreign DNA via base pairing with a crRNA. However, a
quantitative description of protein binding and nuclease activation at off-target DNA …

Inhibition of CRISPR-Cas12a DNA targeting by nucleosomes and chromatin

I Strohkendl, FA Saifuddin, BA Gibson, MK Rosen… - Science …, 2021 - science.org
Genome engineering nucleases must access chromatinized DNA. Here, we investigate how
AsCas12a cleaves DNA within human nucleosomes and phase-condensed nucleosome …

An aging-independent replicative lifespan in a symmetrically dividing eukaryote

EC Spivey, SK Jones Jr, JR Rybarski, FA Saifuddin… - Elife, 2017 - elifesciences.org
10.7554/eLife.20340.001 The replicative lifespan (RLS) of a cell—defined as the number of
cell divisions before death—has informed our understanding of the mechanisms of cellular …

[PDF][PDF] Sleep is required to consolidate odor memory and remodel olfactory synapses

…, KL Benedetti, C Brueggemann, MFA Saifuddin… - Cell, 2023 - cell.com
Animals with complex nervous systems demand sleep for memory consolidation and synaptic
remodeling. Here, we show that, although the Caenorhabditis elegans nervous system …

[HTML][HTML] See Elegans: Simple-to-use, accurate, and automatic 3D detection of neural activity from densely packed neurons

…, IF Cavallo, D Caprini, CW Connor, MFA Saifuddin… - Plos one, 2024 - journals.plos.org
In the emerging field of whole-brain imaging at single-cell resolution, which represents one
of the new frontiers to investigate the link between brain activity and behavior, the nematode …

Sortase-mediated fluorescent labeling of CRISPR complexes

KE Dillard, JM Schaub, MW Brown, FA Saifuddin… - Methods in …, 2019 - Elsevier
Fluorescent labeling of proteins is a critical requirement for single-molecule imaging studies.
Many protein labeling strategies require harsh conditions or large epitopes that can …

The TRPV Channel OSM-9 is Required Non-Cell Autonomously for Sleep-Dependent Olfactory Memory

KL Benedetti, MFA Saifuddin, JM Miller, R Chandra… - bioRxiv, 2020 - biorxiv.org
Memory, defined as an alteration in behavior towards a stimulus that follows as a consequence
of experience, arises when a sensory stimulus is encountered at the same time that the …

[PDF][PDF] Olfactory memory consolidation requires the TRPV channel OSM-9 in sensory neurons of the circuit.

KL Benedetti, FA Saifuddin, JM Miller, R Chandra… - scholar.archive.org
Memory is one of the most important abilities of the brain. It is defined as an alteration in
behavior as a consequence of an experience. For example, the C. elegans nematode will …

Sleep is required for odor exposure to consolidate memory and remodel olfactory synapses

…, A Bokka, KL Benedetti, C Brueggemann, F Saifuddin… - bioRxiv, 2020 - biorxiv.org
Animals with complex nervous systems demand sleep for memory consolidation and synaptic
remodeling. Here we show that though the Caenorhabditis elegans nervous system has a …