User profiles for Francisco Salavert

Francisco Salavert Torres

Centro de Investigación Príncipe Felipe (CIPF)
Verified email at cipf.es
Cited by 700

Babelomics 5.0: functional interpretation for new generations of genomic data

R Alonso, F Salavert, F Garcia-Garcia… - Nucleic acids …, 2015 - academic.oup.com
Babelomics has been running for more than one decade offering a user-friendly interface
for the functional analysis of gene expression and genomic data. Here we present its fifth …

[HTML][HTML] High throughput estimation of functional cell activities reveals disease mechanisms and predicts relevant clinical outcomes

MR Hidalgo, C Cubuk, A Amadoz, F Salavert… - Oncotarget, 2017 - ncbi.nlm.nih.gov
Understanding the aspects of the cell functionality that account for disease or drug action
mechanisms is a main challenge for precision medicine. Here we propose a new method that …

[HTML][HTML] Understanding disease mechanisms with models of signaling pathway activities

…, S Tarazona, A Amadoz, C Armero, F Salavert… - BMC systems …, 2014 - Springer
Background Understanding the aspects of the cell functionality that account for disease or
drug action mechanisms is one of the main challenges in the analysis of genomic data and is …

A web-based interactive framework to assist in the prioritization of disease candidate genes in whole-exome sequencing studies

A Alemán, F Garcia-Garcia, F Salavert… - Nucleic acids …, 2014 - academic.oup.com
Whole-exome sequencing has become a fundamental tool for the discovery of disease-related
genes of familial diseases and the identification of somatic driver variants in cancer. …

[HTML][HTML] Using activation status of signaling pathways as mechanism-based biomarkers to predict drug sensitivity

A Amadoz, P Sebastian-Leon, E Vidal, F Salavert… - Scientific reports, 2015 - nature.com
Many complex traits, as drug response, are associated with changes in biological pathways
rather than being caused by single gene alterations. Here, a predictive framework is …

[HTML][HTML] Differential metabolic activity and discovery of therapeutic targets using summarized metabolic pathway models

…, MR Hidalgo, A Amadoz, K Rian, F Salavert… - NPJ systems biology …, 2019 - nature.com
In spite of the increasing availability of genomic and transcriptomic data, there is still a gap
between the detection of perturbations in gene expression and the understanding of their …

[PDF][PDF] Community assessment of the predictability of cancer protein and phosphoprotein levels from genomics and transcriptomics

…, JC Rajapakse, T Rantapero, H Ryu, F Salavert… - Cell systems, 2020 - cell.com
Cancer is driven by genomic alterations, but the processes causing this disease are largely
performed by proteins. However, proteins are harder and more expensive to measure than …

CellBase, a comprehensive collection of RESTful web services for retrieving relevant biological information from heterogeneous sources

M Bleda, J Tarraga, A De María, F Salavert… - Nucleic acids …, 2012 - academic.oup.com
During the past years, the advances in high-throughput technologies have produced an
unprecedented growth in the number and size of repositories and databases storing relevant …

Actionable pathways: interactive discovery of therapeutic targets using signaling pathway models

F Salavert, MR Hidago, A Amadoz… - Nucleic acids …, 2016 - academic.oup.com
The discovery of actionable targets is crucial for targeted therapies and is also a constituent
part of the drug discovery process. The success of an intervention over a target depends …

VARIANT: Command Line, Web service and Web interface for fast and accurate functional characterization of variants found by Next-Generation Sequencing

I Medina, A De Maria, M Bleda, F Salavert… - Nucleic acids …, 2012 - academic.oup.com
The massive use of Next-Generation Sequencing (NGS) technologies is uncovering an
unexpected amount of variability. The functional characterization of such variability, particularly …