Two independent modes of chromatin organization revealed by cohesin removal

…, NA Fonseca, W Huber, CH Haering, L Mirny, F Spitz - Nature, 2017 - nature.com
Imaging and chromosome conformation capture studies have revealed several layers of
chromosome organization, including segregation into megabase-sized active and inactive …

Transcription factors: from enhancer binding to developmental control

F Spitz, EEM Furlong - Nature reviews genetics, 2012 - nature.com
Developmental progression is driven by specific spatiotemporal domains of gene
expression, which give rise to stereotypically patterned embryos even in the presence of …

Formation of new chromatin domains determines pathogenicity of genomic duplications

…, L Lambie, F Brancati, A Pombo, M Vingron, F Spitz… - Nature, 2016 - nature.com
Chromosome conformation capture methods have identified subchromosomal structures of
higher-order chromatin interactions called topologically associated domains (TADs) that are …

Phenotypic impact of genomic structural variation: insights from and for human disease

J Weischenfeldt, O Symmons, F Spitz… - Nature Reviews …, 2013 - nature.com
Genomic structural variants have long been implicated in phenotypic diversity and human
disease, but dissecting the mechanisms by which they exert their functional impact has proven …

Long-range enhancers regulating Myc expression are required for normal facial morphogenesis

…, K Langenfeld, NA Fonseca, JC Marioni, F Spitz - Nature …, 2014 - nature.com
Cleft lip with or without cleft palate (CL/P) is one of the most common congenital malformations
observed in humans, with 1 occurrence in every 500–1,000 births 1 , 2 . A 640-kb …

KAP1 controls endogenous retroviruses in embryonic stem cells

…, H Layard-Liesching, S Verp, J Marquis, F Spitz… - Nature, 2010 - nature.com
More than forty per cent of the mammalian genome is derived from retroelements, of which
about one-quarter are endogenous retroviruses (ERVs) 1 . Some are still active, notably in …

[HTML][HTML] A global control region defines a chromosomal regulatory landscape containing the HoxD cluster

F Spitz, F Gonzalez, D Duboule - Cell, 2003 - cell.com
During limb development, coordinated expression of several Hoxd genes is required in
presumptive digits. We searched for the underlying control sequences upstream from the cluster …

[PDF][PDF] Cnidarian cell type diversity and regulation revealed by whole-organism single-cell RNA-Seq

…, S Schmutz, S Novault, PRH Steinmetz, F Spitz… - Cell, 2018 - cell.com
The emergence and diversification of cell types is a leading factor in animal evolution. So far,
systematic characterization of the gene regulatory programs associated with cell type …

[PDF][PDF] The Shh topological domain facilitates the action of remote enhancers by reducing the effects of genomic distances

…, S Remeseiro, T Aktas, F Klein, W Huber, F Spitz - Developmental cell, 2016 - cell.com
Gene expression often requires interaction between promoters and distant enhancers,
which occur within the context of highly organized topologically associating domains (TADs). …

[HTML][HTML] A regulatory archipelago controls Hox genes transcription in digits

…, E Joye, L Thevenet, E Splinter, W de Laat, F Spitz… - Cell, 2011 - cell.com
The evolution of digits was an essential step in the success of tetrapods. Among the key
players, Hoxd genes are coordinately regulated in developing digits, where they help organize …