Global genetic diversity status and trends: towards a suite of Essential Biodiversity Variables (EBVs) for genetic composition

S Hoban, FI Archer, LD Bertola, JG Bragg… - Biological …, 2022 - Wiley Online Library
Biodiversity underlies ecosystem resilience, ecosystem function, sustainable economies,
and human well‐being. Understanding how biodiversity sustains ecosystems under …

Complete mitochondrial genome phylogeographic analysis of killer whales (Orcinus orca) indicates multiple species

PA Morin, FI Archer, AD Foote, J Vilstrup… - Genome …, 2010 - genome.cshlp.org
Killer whales (Orcinus orca) currently comprise a single, cosmopolitan species with a
diverse diet. However, studies over the last 30 yr have revealed populations of sympatric “ecotypes…

stratag: An r package for manipulating, summarizing and analysing population genetic data

FI Archer, PE Adams… - Molecular Ecology …, 2017 - Wiley Online Library
We introduce the r package stratag as a user‐friendly population genetics toolkit. stratag
provides easy access to a suite of standard genetic summaries as well as the ability to rapidly …

The migratory whale herd concept: A novel unit to conserve under the ecological paradigm

…, PJ Clapham, DW Weller, FI Archer… - Marine Mammal …, 2023 - Wiley Online Library
Photographic and genetic studies have revealed the complex population structure of migratory
large whales. Most research and management are geographically based, focusing on …

[HTML][HTML] Mitogenome phylogenetics: the impact of using single regions and partitioning schemes on topology, substitution rate and divergence time estimation

S Duchêne, FI Archer, J Vilstrup, S Caballero… - PloS one, 2011 - journals.plos.org
The availability of mitochondrial genome sequences is growing as a result of recent technological
advances in molecular biology. In phylogenetic analyses, the complete mitogenome is …

A review of molecular genetic markers and analytical approaches that have been used for delimiting marine mammal subspecies and species

…, PA Morin, FI Archer… - Marine Mammal …, 2017 - Wiley Online Library
Uncertainty in marine mammal taxonomy is increasingly being addressed using molecular
genetic data. We examined 32 peer‐reviewed articles published between 1994 and 2011to …

Life history of the Indo‐Pacific humpback dolphin in the Pearl River Estuary, southern China

…, SK Hung, KM Robertson, FI Archer - Marine Mammal …, 2012 - Wiley Online Library
We studied life history characteristics of the Hong Kong/Pearl River Estuary population of
Indo‐Pacific humpback dolphins (Sousa chinensis), based on data from 120 specimens …

Reference genome and demographic history of the most endangered marine mammal, the vaquita

PA Morin, FI Archer, CD Avila… - Molecular Ecology …, 2021 - Wiley Online Library
The vaquita is the most critically endangered marine mammal, with fewer than 19 remaining
in the wild. First described in 1958, the vaquita has been in rapid decline for more than 20 …

Common bottlenose dolphins (Tursiops truncatus) in California waters: Cranial differentiation of coastal and offshore ecotypes

…, JL Thieleking, WA Walker, FI Archer… - Marine Mammal …, 2011 - Wiley Online Library
Coastal and offshore bottlenose dolphins in California waters are currently assessed and
managed as separate stocks. Recent molecular studies (of mtDNA haplotypes and …

Sperm whale population structure in the eastern and central North Pacific inferred by the use of single‐nucleotide polymorphisms, microsatellites and mitochondrial …

SL Mesnick, BL Taylor, FI Archer… - Molecular Ecology …, 2011 - Wiley Online Library
We use mitochondrial DNA (mtDNA) (400 bp), six microsatellites and 36 single‐nucleotide
polymorphisms (SNPs), 20 of which were linked, to investigate population structure of sperm …