[HTML][HTML] Organoid cultures recapitulate esophageal adenocarcinoma heterogeneity providing a model for clonality studies and precision therapeutics

…, E Chen, J Gilbert, A Noorani, G Devonshire… - Nature …, 2018 - nature.com
… Organoid cultures of b, c, d CAM277 and f, g, h CAM338 were continually cultured and …
c, g Number of total mutations and mutated cancer-related genes from individual subclones. …

Molecular phenotyping reveals the identity of Barrett's esophagus and its malignant transition

…, CW Bleaney, KT Mahbubani, G Devonshire… - Science, 2021 - science.org
… Font color denotes tissue types, same as in (G). … (G) Fluorescence imaging of GFP indicating
successful transduction of organoids. Ctr, control. (H) Marker genes highly expressed in BE …

The landscape of selection in 551 esophageal adenocarcinomas defines genomic biomarkers for the clinic

…, S Abbas, J Perner, L Bower, G Devonshire… - Nature …, 2019 - nature.com
Esophageal adenocarcinoma (EAC) is a poor-prognosis cancer type with rapidly rising
incidence. Understanding of the genetic events driving EAC development is limited, and there …

Single-cell RNA sequencing unifies developmental programs of esophageal and gastric intestinal metaplasia

…, TS Cheung, EL Black, N Masqué-Soler, G Devonshire… - Cancer discovery, 2023 - AACR
G. Devonshire reports grants from Cancer Research UK during the conduct of the study. M.
di Pietro reports grants from the Medical Research Council during the conduct of the study. …

Identification of prognostic phenotypes of esophageal adenocarcinoma in 2 independent cohorts

…, M Eldridge, M Secrier, L Bower, G Devonshire… - Gastroenterology, 2018 - Elsevier
Background & Aims Most patients with esophageal adenocarcinoma (EAC) present with de
novo tumors. Although this could be due to inadequate screening strategies, the precise …

Identification of subtypes of Barrett's esophagus and esophageal adenocarcinoma based on DNA methylation profiles and integration of transcriptome and genome …

…, VV Subash, S Abbas, A Blasko, G Devonshire… - Gastroenterology, 2020 - Elsevier
Background & Aims Esophageal adenocarcinomas (EACs) are heterogeneous and often
preceded by Barrett’s esophagus (BE). Many genomic changes have been associated with …

[HTML][HTML] Longitudinal tracking of 97 esophageal adenocarcinomas using liquid biopsy sampling

…, A Northrop, H Coles, AM Redmond, G Devonshire… - Annals of …, 2021 - Elsevier
Background The incidence of esophageal adenocarcinoma (EAC) is rapidly rising and has
a 5-year survival rate of <20%. Beyond TNM (tumor–node–metastasis) staging, no reliable …

[HTML][HTML] Multi-omic cross-sectional cohort study of pre-malignant Barrett's esophagus reveals early structural variation and retrotransposon activity

…, M di Pietro, S Abbas, G Devonshire… - Nature …, 2022 - nature.com
Barrett’s esophagus is a pre-malignant lesion that can progress to esophageal adenocarcinoma.
We perform a multi-omic analysis of pre-cancer samples from 146 patients with a range …

[HTML][HTML] Rearrangement processes and structural variations show evidence of selection in oesophageal adenocarcinomas

AWT Ng, G Contino, S Killcoyne, G Devonshire… - Communications …, 2022 - nature.com
Oesophageal adenocarcinoma (OAC) provides an ideal case study to characterize large-scale
rearrangements. Using whole genome short-read sequencing of 383 cases, for which …

Transcriptomic profiling reveals three molecular phenotypes of adenocarcinoma at the gastroesophageal junction

…, L Bower, MD Eldridge, G Devonshire… - … journal of cancer, 2019 - Wiley Online Library
Cancers occurring at the gastroesophageal junction (GEJ) are classified as predominantly
esophageal or gastric, which is often difficult to decipher. We hypothesized that the …