User profiles for Göksel Mısırlı

Goksel Misirli

Senior Lecturer, Keele University
Verified email at keele.ac.uk
Cited by 2108

Anomaly detection for IoT time-series data: A survey

AA Cook, G Mısırlı, Z Fan - IEEE Internet of Things Journal, 2019 - ieeexplore.ieee.org
Anomaly detection is a problem with applications for a wide variety of domains; it involves
the identification of novel or unexpected observations or sequences within the data being …

SynBioHub: a standards-enabled design repository for synthetic biology

JA McLaughlin, CJ Myers, Z Zundel, G Mısırlı… - ACS synthetic …, 2018 - ACS Publications
The SynBioHub repository ( https://synbiohub.org ) is an open-source software project that
facilitates the sharing of information about engineered biological systems. SynBioHub …

[HTML][HTML] The synthetic biology open language (SBOL) version 3: simplified data exchange for bioengineering

JA McLaughlin, J Beal, G Mısırlı, R Grünberg… - … in Bioengineering and …, 2020 - frontiersin.org
The Synthetic Biology Open Language (SBOL) is a community-developed data standard
that allows knowledge about biological designs to be captured using a machine-tractable, …

Harmonizing semantic annotations for computational models in biology

ML Neal, M König, D Nickerson, G Mısırlı… - Briefings in …, 2019 - academic.oup.com
Life science researchers use computational models to articulate and test hypotheses about
the behavior of biological systems. Semantic annotation is a critical component for …

A standard-enabled workflow for synthetic biology

…, C Madsen, JA McLaughlin, G Mısırlı… - Biochemical Society …, 2017 - portlandpress.com
A synthetic biology workflow is composed of data repositories that provide information about
genetic parts, sequence-level design tools to compose these parts into circuits, visualization …

Data integration and mining for synthetic biology design

G Mısırlı, J Hallinan, M Pocock, P Lord… - ACS synthetic …, 2016 - ACS Publications
One aim of synthetic biologists is to create novel and predictable biological systems from
simpler modular parts. This approach is currently hampered by a lack of well-defined and …

Synthetic biology open language (SBOL) version 3.1. 0

…, V Kulkarni, J McLaughlin, G Mısırlı… - Journal of Integrative …, 2023 - degruyter.com
Synthetic biology builds upon genetics, molecular biology, and metabolic engineering by
applying engineering principles to the design of biological systems. When designing a …

libSBOLj 2.0: a java library to support SBOL 2.0

Z Zhang, T Nguyen, N Roehner, G Misirli… - IEEE life sciences …, 2015 - ieeexplore.ieee.org
The Synthetic Biology Open Language (SBOL) is an emerging data standard for representing
synthetic biology designs. The goal of SBOL is to improve the reproducibility of these …

The SBOL stack: a platform for storing, publishing, and sharing synthetic biology designs

C Madsen, JA McLaughlin, G Mısırlı… - ACS synthetic …, 2016 - ACS Publications
Recently, synthetic biologists have developed the Synthetic Biology Open Language (SBOL),
a data exchange standard for descriptions of genetic parts, devices, modules, and systems…

The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology

…, JD Johnson, A Kuchinsky, M Lux, G Misirli… - Nature …, 2014 - nature.com
The re-use of previously validated designs is critical to the evolution of synthetic biology from
a research discipline to an engineering practice. Here we describe the Synthetic Biology …