User profiles for Görkem Garipler

Görkem Garipler

Patch Biosciences
Verified email at nyu.edu
Cited by 360

Proneural factors Ascl1 and Neurog2 contribute to neuronal subtype identities by establishing distinct chromatin landscapes

…, M Rossillo, M Moreno-Estellés, G Garipler… - Nature …, 2019 - nature.com
Developmental programs that generate the astonishing neuronal diversity of the nervous
system are not completely understood and thus present a major challenge for clinical …

[PDF][PDF] A multi-step transcriptional and chromatin state cascade underlies motor neuron programming from embryonic stem cells

S Velasco, MM Ibrahim, A Kakumanu, G Garipler… - Cell stem cell, 2017 - cell.com
Direct cell programming via overexpression of transcription factors (TFs) aims to control cell
fate with the degree of precision needed for clinical applications. However, the regulatory …

[PDF][PDF] Capybara: A computational tool to measure cell identity and fate transitions

W Kong, YC Fu, EM Holloway, G Garipler, X Yang… - Cell Stem Cell, 2022 - cell.com
Measuring cell identity in development, disease, and reprogramming is challenging as cell
types and states are in continual transition. Here, we present Capybara, a computational tool …

[HTML][HTML] Mitochondrial dysfunction plus high-sugar diet provokes a metabolic crisis that inhibits growth

E Kemppainen, J George, G Garipler, T Tuomela… - PLoS …, 2016 - journals.plos.org
The Drosophila mutant tko 25t exhibits a deficiency of mitochondrial protein synthesis,
leading to a global insufficiency of respiration and oxidative phosphorylation. This entrains an …

Genome-wide screening identifies Trim33 as an essential regulator of dendritic cell differentiation

I Tiniakou, PF Hsu, LS Lopez-Zepeda, G Garipler… - Science …, 2024 - science.org
The development of dendritic cells (DCs), including antigen-presenting conventional DCs (cDCs)
and cytokine-producing plasmacytoid DCs (pDCs), is controlled by the growth factor …

[HTML][HTML] Essential transcription factors for induced neuron differentiation

C Lu, G Garipler, C Dai, T Roush… - Nature …, 2023 - nature.com
Neurogenins are proneural transcription factors required to specify neuronal identity. Their
overexpression in human pluripotent stem cells rapidly produces cortical-like neurons with …

Deletion of conserved protein phosphatases reverses defects associated with mitochondrial DNA damage in Saccharomyces cerevisiae

G Garipler, N Mutlu, NA Lack… - Proceedings of the …, 2014 - National Acad Sciences
Mitochondrial biogenesis is regulated by signaling pathways sensitive to extracellular conditions
and to the internal environment of the cell. Therefore, treatments for disease caused by …

[PDF][PDF] The BTB transcription factors ZBTB11 and ZFP131 maintain pluripotency by repressing pro-differentiation genes

G Garipler, C Lu, A Morrissey, LS Lopez-Zepeda, Y Pei… - Cell reports, 2022 - cell.com
In pluripotent cells, a delicate activation-repression balance maintains pro-differentiation
genes ready for rapid activation. The identity of transcription factors (TFs) that specifically …

[HTML][HTML] Reduced Glucose Sensation Can Increase the Fitness of Saccharomyces cerevisiae Lacking Mitochondrial DNA

E Akdoğan, M Tardu, G Garipler, G Baytek, IH Kavakli… - PLoS …, 2016 - journals.plos.org
Damage to the mitochondrial genome (mtDNA) can lead to diseases for which there are no
clearly effective treatments. Since mitochondrial function and biogenesis are controlled by …

Activation of the Pleiotropic Drug Resistance Pathway Can Promote Mitochondrial DNA Retention by Fusion-Defective Mitochondria in Saccharomyces cerevisiae

N Mutlu, G Garipler, E Akdoğan… - G3: Genes, Genomes …, 2014 - academic.oup.com
Genetic and microscopic approaches using Saccharomyces cerevisiae have identified many
proteins that play a role in mitochondrial dynamics, but it is possible that other proteins and …