[HTML][HTML] EAGER: efficient ancient genome reconstruction

A Peltzer, G Jäger, A Herbig, A Seitz, C Kniep, J Krause… - Genome biology, 2016 - Springer
Background The automated reconstruction of genome sequences in ancient genome analysis
is a multifaceted process. Results Here we introduce EAGER, a time-efficient pipeline, …

Genome-Wide Comparison of Medieval and Modern Mycobacterium leprae

…, P Singh, TA Mendum, B Krause-Kyora, G Jäger… - Science, 2013 - science.org
Leprosy was endemic in Europe until the Middle Ages. Using DNA array capture, we have
obtained genome sequences of Mycobacterium leprae from skeletons of five medieval …

Origin of modern syphilis and emergence of a pandemic Treponema pallidum cluster

N Arora, VJ Schuenemann, G Jäger, A Peltzer… - Nature …, 2016 - nature.com
The abrupt onslaught of the syphilis pandemic that started in the late fifteenth century
established this devastating infectious disease as one of the most feared in human history 1. …

Engineering E. coli for large-scale production–strategies considering ATP expenses and transcriptional responses

M Löffler, JD Simen, G Jäger, K Schäferhoff… - Metabolic …, 2016 - Elsevier
Microbial producers such as Escherichia coli are evolutionarily trained to adapt to changing
substrate availabilities. Being exposed to large-scale production conditions, their complex, …

Interferon kappa inhibits human papillomavirus 31 transcription by inducing Sp100 proteins

C Habiger, G Jäger, M Walter, T Iftner… - Journal of …, 2016 - Am Soc Microbiol
High-risk human papillomaviruses (hr-HPV) establish persistent infections in keratinocytes,
which can lead to cancer of the anogenital tract. Interferons (IFNs) are a family of secreted …

Transcriptional response of Escherichia coli to ammonia and glucose fluctuations

JD Simen, M Löffler, G Jäger… - Microbial …, 2017 - Wiley Online Library
In large‐scale production processes, metabolic control is typically achieved by limited supply
of essential nutrients such as glucose or ammonia. With increasing bioreactor dimensions, …

[HTML][HTML] A non-interventional clinical trial assessing immune responses after radiofrequency ablation of liver metastases from colorectal cancer

MW Löffler, B Nussbaum, G Jäger… - Frontiers in …, 2019 - frontiersin.org
Background: Radiofrequency ablation (RFA) is an established treatment option for malignancies
located in the liver. RFA-induced irreversible coagulation necrosis leads to the release …

[HTML][HTML] MALT1 protease activity controls the expression of inflammatory genes in keratinocytes upon zymosan stimulation

…, T Maier, M Brändle, C Schönfeld, G Jäger… - Journal of Investigative …, 2016 - Elsevier
The protease activity of the paracaspase mucosa-associated lymphoid tissue lymphoma
translocation gene 1 (MALT1) plays an important role in antigen receptor-mediated lymphocyte …

Parallel detection of ancient pathogens via array-based DNA capture

KI Bos, G Jäger, VJ Schuenemann… - … of the Royal …, 2015 - royalsocietypublishing.org
DNA capture coupled with next generation sequencing is highly suitable for the study of
ancient pathogens. Screening for pathogens can, however, be meticulous when assays are …

GenomeRing: alignment visualization based on SuperGenome coordinates

A Herbig, G Jäger, F Battke, K Nieselt - Bioinformatics, 2012 - academic.oup.com
Motivation: The number of completely sequenced genomes is continuously rising, allowing
for comparative analyses of genomic variation. Such analyses are often based on whole-…