[HTML][HTML] EAGER: efficient ancient genome reconstruction
Background The automated reconstruction of genome sequences in ancient genome analysis
is a multifaceted process. Results Here we introduce EAGER, a time-efficient pipeline, …
is a multifaceted process. Results Here we introduce EAGER, a time-efficient pipeline, …
Genome-Wide Comparison of Medieval and Modern Mycobacterium leprae
Leprosy was endemic in Europe until the Middle Ages. Using DNA array capture, we have
obtained genome sequences of Mycobacterium leprae from skeletons of five medieval …
obtained genome sequences of Mycobacterium leprae from skeletons of five medieval …
Origin of modern syphilis and emergence of a pandemic Treponema pallidum cluster
The abrupt onslaught of the syphilis pandemic that started in the late fifteenth century
established this devastating infectious disease as one of the most feared in human history 1. …
established this devastating infectious disease as one of the most feared in human history 1. …
Engineering E. coli for large-scale production–strategies considering ATP expenses and transcriptional responses
M Löffler, JD Simen, G Jäger, K Schäferhoff… - Metabolic …, 2016 - Elsevier
Microbial producers such as Escherichia coli are evolutionarily trained to adapt to changing
substrate availabilities. Being exposed to large-scale production conditions, their complex, …
substrate availabilities. Being exposed to large-scale production conditions, their complex, …
Interferon kappa inhibits human papillomavirus 31 transcription by inducing Sp100 proteins
C Habiger, G Jäger, M Walter, T Iftner… - Journal of …, 2016 - Am Soc Microbiol
High-risk human papillomaviruses (hr-HPV) establish persistent infections in keratinocytes,
which can lead to cancer of the anogenital tract. Interferons (IFNs) are a family of secreted …
which can lead to cancer of the anogenital tract. Interferons (IFNs) are a family of secreted …
Transcriptional response of Escherichia coli to ammonia and glucose fluctuations
JD Simen, M Löffler, G Jäger… - Microbial …, 2017 - Wiley Online Library
In large‐scale production processes, metabolic control is typically achieved by limited supply
of essential nutrients such as glucose or ammonia. With increasing bioreactor dimensions, …
of essential nutrients such as glucose or ammonia. With increasing bioreactor dimensions, …
[HTML][HTML] A non-interventional clinical trial assessing immune responses after radiofrequency ablation of liver metastases from colorectal cancer
MW Löffler, B Nussbaum, G Jäger… - Frontiers in …, 2019 - frontiersin.org
Background: Radiofrequency ablation (RFA) is an established treatment option for malignancies
located in the liver. RFA-induced irreversible coagulation necrosis leads to the release …
located in the liver. RFA-induced irreversible coagulation necrosis leads to the release …
[HTML][HTML] MALT1 protease activity controls the expression of inflammatory genes in keratinocytes upon zymosan stimulation
…, T Maier, M Brändle, C Schönfeld, G Jäger… - Journal of Investigative …, 2016 - Elsevier
The protease activity of the paracaspase mucosa-associated lymphoid tissue lymphoma
translocation gene 1 (MALT1) plays an important role in antigen receptor-mediated lymphocyte …
translocation gene 1 (MALT1) plays an important role in antigen receptor-mediated lymphocyte …
Parallel detection of ancient pathogens via array-based DNA capture
KI Bos, G Jäger, VJ Schuenemann… - … of the Royal …, 2015 - royalsocietypublishing.org
DNA capture coupled with next generation sequencing is highly suitable for the study of
ancient pathogens. Screening for pathogens can, however, be meticulous when assays are …
ancient pathogens. Screening for pathogens can, however, be meticulous when assays are …
GenomeRing: alignment visualization based on SuperGenome coordinates
Motivation: The number of completely sequenced genomes is continuously rising, allowing
for comparative analyses of genomic variation. Such analyses are often based on whole-…
for comparative analyses of genomic variation. Such analyses are often based on whole-…