[HTML][HTML] Statistical inference and reverse engineering of gene regulatory networks from observational expression data
… A DAG, G = (V, E), is called a Bayesian network of P if and only if G is a minimal I-… G and
independence relations of a probability distribution P consistent with the structure of the DAG G. …
independence relations of a probability distribution P consistent with the structure of the DAG G. …
[PDF][PDF] Impact of genetic polymorphisms on human immune cell gene expression
While many genetic variants have been associated with risk for human diseases, how these
variants affect gene expression in various cell types remains largely unknown. To address …
variants affect gene expression in various cell types remains largely unknown. To address …
[HTML][HTML] Inferring the conservative causal core of gene regulatory networks
G Altay, F Emmert-Streib - BMC systems biology, 2010 - Springer
… For each network G we generate an ensemble of k ∈ N different expression data sets, X i j
k … This results in N different F-scores F k , k ∈ N, for a network G. It is important to emphasize …
k … This results in N different F-scores F k , k ∈ N, for a network G. It is important to emphasize …
Probabilistic benefit-cost analysis for earthquake damage mitigation: Evaluating measures for apartment houses in Turkey
… To consider a wide range of ground motion shaking levels in this study, PGA values from
0.01 g to 1.4 g are considered when simulating the input acceleration time histories. In total, …
0.01 g to 1.4 g are considered when simulating the input acceleration time histories. In total, …
Cold accretion flows and the nature of high column density H i absorption at redshift 3
Simulations predict that galaxies grow primarily through the accretion of gas that has not gone
through an accretion shock near the virial radius and that this cold gas flows towards the …
through an accretion shock near the virial radius and that this cold gas flows towards the …
Bigbio: A framework for data-centric biomedical natural language processing
Training and evaluating language models increasingly requires the construction of meta-datasets--diverse
collections of curated data with clear provenance. Natural language …
collections of curated data with clear provenance. Natural language …
Experimental and numerical modal analyses of a historical masonry palace
This study presents the determination of modal properties of a historical masonry palace
built between 1861 and 1865 in Istanbul. Both an experimental and a numerical study have …
built between 1861 and 1865 in Istanbul. Both an experimental and a numerical study have …
Through Thick and Thin—HI Absorption in Cosmological Simulations
… Gabriel Altay 1 , Tom Theuns 1,2 , Joop Schaye 3 , Neil HM Crighton 4,5 , and Claudio Dalla
… Our self-shielding algorithm will be discussed in detail elsewhere (G. Altay et al. 2011, in …
… Our self-shielding algorithm will be discussed in detail elsewhere (G. Altay et al. 2011, in …
[HTML][HTML] Self-organized intestinal epithelial monolayers in crypt and villus-like domains show effective barrier function
Intestinal organoids have emerged as a powerful in vitro tool for studying intestinal biology
due to their resemblance to in vivo tissue at the structural and functional levels. However, …
due to their resemblance to in vivo tissue at the structural and functional levels. However, …
Revealing differences in gene network inference algorithms on the network level by ensemble methods
G Altay, F Emmert-Streib - Bioinformatics, 2010 - academic.oup.com
… Altay, 2010). These measures assume the availability of an ensemble of datasets 𝒟 = {D 1
(G),…, D E (G… same underlying structure of a gene network G. More precisely, for the following …
(G),…, D E (G… same underlying structure of a gene network G. More precisely, for the following …