A benchmarking of pipelines for detecting ncRNAs from RNA-Seq data
S Di Bella, A La Ferlita, G Carapezza… - Briefings in …, 2020 - academic.oup.com
Next-Generation Sequencing (NGS) is a high-throughput technology widely applied to
genome sequencing and transcriptome profiling. RNA-Seq uses NGS to reveal RNA identities …
genome sequencing and transcriptome profiling. RNA-Seq uses NGS to reveal RNA identities …
Robust design of microbial strains
… For a set of L genetic manipulations, the GPR mappings are represented by a forumla matrix
G, where the forumla th element is 1 if the lth genetic manipulation maps onto the reaction j, …
G, where the forumla th element is 1 if the lth genetic manipulation maps onto the reaction j, …
[HTML][HTML] Multi-objective optimization of genome-scale metabolic models: the case of ethanol production
Ethanol is among the largest fermentation product used worldwide, accounting for more
than $$90\%$$ 90 % of all biofuel produced in the last decade. However current production …
than $$90\%$$ 90 % of all biofuel produced in the last decade. However current production …
Pareto optimal design for synthetic biology
…, J Costanza, G Carapezza, G Nicosia - IEEE transactions on …, 2015 - ieeexplore.ieee.org
Recent advances in synthetic biology call for robust, flexible and efficient in silico optimization
methodologies. We present a Pareto design approach for the bi-level optimization …
methodologies. We present a Pareto design approach for the bi-level optimization …
[HTML][HTML] Establishment and genomic characterization of the new chordoma cell line Chor-IN-1
…, L Cozzi, C Cusi, F Bozzi, N Beltrami, G Carapezza… - Scientific reports, 2017 - nature.com
… Giovanni Carapezza … Slides were G banded with Wright staining and analyzed at 100
X magnification with a Leica DM6000D microscope. … Giovanni Carapezza …
X magnification with a Leica DM6000D microscope. … Giovanni Carapezza …
[HTML][HTML] Multi-target analysis and design of mitochondrial metabolism
… In general, a constraint is a function g(x) that certificates if a solution for a given optimization
problem is feasible or not. We consider constraints defined as g(x): R n → R if g(x) ≤ θ, …
problem is feasible or not. We consider constraints defined as g(x): R n → R if g(x) ≤ θ, …
Multi-objective optimisation, sensitivity and robustness analysis in FBA modelling
… where g is a vector of weights (n dimensional) associated with the synthetic objectives, and
g is its transpose. For example, when the synthetic objectives vj and vh have to be maximised…
g is its transpose. For example, when the synthetic objectives vj and vh have to be maximised…
Pareto optimality in organelle energy metabolism analysis
C Angione, G Carapezza, J Costanza… - … ACM transactions on …, 2013 - ieeexplore.ieee.org
… Giovanni Carapezza received the graduate degree in telecommunications engineering
from the University of Catania in July 2011 with a thesis entitled “Services and potentialities of …
from the University of Catania in July 2011 with a thesis entitled “Services and potentialities of …
Efficient behavior of photosynthetic organelles via Pareto optimality, identifiability, and sensitivity analysis
G Carapezza, R Umeton, J Costanza… - ACS synthetic …, 2013 - ACS Publications
In this work, we develop methodologies for analyzing and cross comparing metabolic models.
We investigate three important metabolic networks to discuss the complexity of biological …
We investigate three important metabolic networks to discuss the complexity of biological …
Multi-objective optimization and analysis for the design space exploration of analog circuits and solar cells
This paper introduces PareDA (ParetoDesignAutomation), a composite automated methodology
for the optimization of analog circuits and solar cell devices. The PareDA framework …
for the optimization of analog circuits and solar cell devices. The PareDA framework …