User profiles for G. Formenti
Giulio FormentiThe Rockefeller University Verified email at rockefeller.edu Cited by 5267 |
[HTML][HTML] The era of reference genomes in conservation genomics
Progress in genome sequencing now enables the large-scale generation of reference genomes.
Various international initiatives aim to generate reference genomes representing global …
Various international initiatives aim to generate reference genomes representing global …
[HTML][HTML] How genomics can help biodiversity conservation
The availability of public genomic resources can greatly assist biodiversity assessment,
conservation, and restoration efforts by providing evidence for scientifically informed …
conservation, and restoration efforts by providing evidence for scientifically informed …
[HTML][HTML] Long walk to genomics: History and current approaches to genome sequencing and assembly
Genomes represent the starting point of genetic studies. Since the discovery of DNA structure,
scientists have devoted great efforts to determine their sequence in an exact way. In this …
scientists have devoted great efforts to determine their sequence in an exact way. In this …
The complete sequence of a human genome
Since its initial release in 2000, the human reference genome has covered only the
euchromatic fraction of the genome, leaving important heterochromatic regions unfinished. …
euchromatic fraction of the genome, leaving important heterochromatic regions unfinished. …
[HTML][HTML] Towards complete and error-free genome assemblies of all vertebrate species
… h, Correlation between estimated chromosome sizes (in Mb) based on karyotype images
in g and assembled scaffolds in Supplementary Table 4 (bCalAna1) on a log–log scale. v1.0, …
in g and assembled scaffolds in Supplementary Table 4 (bCalAna1) on a log–log scale. v1.0, …
[HTML][HTML] MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads
…, JGRN Ferreira, K Krasheninnikova, G Formenti… - BMC …, 2023 - Springer
Background PacBio high fidelity (HiFi) sequencing reads are both long (15–20 kb) and
highly accurate (> Q20). Because of these properties, they have revolutionised genome …
highly accurate (> Q20). Because of these properties, they have revolutionised genome …
[HTML][HTML] A draft human pangenome reference
…, S Fairley, O Fedrigo, AL Felsenfeld, G Formenti… - Nature, 2023 - nature.com
… g, Flagger read-based assembly evaluation pipeline. Coverage is calculated across the
genome … g, Dotplot illustrating SPDYE2–SPDYE2B haplotype resolved gains within a tandem …
genome … g, Dotplot illustrating SPDYE2–SPDYE2B haplotype resolved gains within a tandem …
The earth BioGenome project 2020: Starting the clock
November 2020 marked 2 y since the launch of the Earth BioGenome Project (EBP), which
aims to sequence all known eukaryotic species in a 10-y timeframe. Since then, significant …
aims to sequence all known eukaryotic species in a 10-y timeframe. Since then, significant …
The complete sequence of a human Y chromosome
The human Y chromosome has been notoriously difficult to sequence and assemble
because of its complex repeat structure that includes long palindromes, tandem repeats and …
because of its complex repeat structure that includes long palindromes, tandem repeats and …
[HTML][HTML] Semi-automated assembly of high-quality diploid human reference genomes
The current human reference genome, GRCh38, represents over 20 years of effort to generate
a high-quality assembly, which has benefitted society 1 , 2 . However, it still has many …
a high-quality assembly, which has benefitted society 1 , 2 . However, it still has many …