User profiles for G. Karakülah
Gökhan KarakülahDokuz Eylul University, Izmir International Biomedicine and Genome Institute Verified email at deu.edu.tr Cited by 873 |
[HTML][HTML] Next generation sequencing technology and genomewide data analysis: Perspectives for retinal research
The advent of high throughput next generation sequencing (NGS) has accelerated the pace
of discovery of disease-associated genetic variants and genomewide profiling of expressed …
of discovery of disease-associated genetic variants and genomewide profiling of expressed …
[PDF][PDF] NRL-regulated transcriptome dynamics of developing rod photoreceptors
Gene regulatory networks (GRNs) guiding differentiation of cell types and cell assemblies in
the nervous system are poorly understood because of inherent complexities and …
the nervous system are poorly understood because of inherent complexities and …
[HTML][HTML] RdRp mutations are associated with SARS-CoV-2 genome evolution
COVID-19, caused by the novel SARS-CoV-2 virus, started in China in late 2019, and soon
became a global pandemic. With the help of thousands of viral genome sequences that have …
became a global pandemic. With the help of thousands of viral genome sequences that have …
[HTML][HTML] Mutations of SARS-CoV-2 nsp14 exhibit strong association with increased genome-wide mutation load
SARS-CoV-2 is a betacoronavirus responsible for COVID-19, a pandemic with global
impact that first emerged in late 2019. Since then, the viral genome has shown considerable …
impact that first emerged in late 2019. Since then, the viral genome has shown considerable …
[HTML][HTML] PeTMbase: a database of plant endogenous target mimics (eTMs)
MicroRNAs (miRNA) are small endogenous RNA molecules, which regulate target gene
expression at post-transcriptional level. Besides, miRNA activity can be controlled by a newly …
expression at post-transcriptional level. Besides, miRNA activity can be controlled by a newly …
Alteration of miRNAs in small neuron-derived extracellular vesicles of alzheimer's disease patients and the effect of extracellular vesicles on microglial immune …
Alzheimer's disease (AD) is one of the most severe neurodegenerative diseases observed
in the elderly population. Although the hallmarks of AD have been identified, the methods for …
in the elderly population. Although the hallmarks of AD have been identified, the methods for …
[HTML][HTML] Expression dynamics of repetitive DNA in early human embryonic development
C Yandım, G Karakülah - BMC genomics, 2019 - Springer
Background The last decade witnessed a number of genome-wide studies on human pre-implantation,
which mostly focused on genes and provided only limited information on repeats, …
which mostly focused on genes and provided only limited information on repeats, …
[HTML][HTML] “In the light of evolution:” keratins as exceptional tumor biomarkers
Keratins (KRTs) are the intermediate filament-forming proteins of epithelial cells, classified,
according to their physicochemical properties, into “soft” and “hard” keratins. They have a key …
according to their physicochemical properties, into “soft” and “hard” keratins. They have a key …
[HTML][HTML] TRAIL promotes the polarization of human macrophages toward a proinflammatory M1 phenotype and is associated with increased survival in cancer patients …
…, A Bursalı, A Conforte, H Güner, G Karakülah… - Frontiers in …, 2023 - frontiersin.org
Background TNF-related apoptosis-inducing ligand (TRAIL) is a member of the TNF
superfamily that can either induce cell death or activate survival pathways after binding to death …
superfamily that can either induce cell death or activate survival pathways after binding to death …
[HTML][HTML] TEffectR: an R package for studying the potential effects of transposable elements on gene expression with linear regression model
Introduction Recent studies highlight the crucial regulatory roles of transposable elements (TEs)
on proximal gene expression in distinct biological contexts such as disease and …
on proximal gene expression in distinct biological contexts such as disease and …