User profiles for G. Karakülah

Gökhan Karakülah

Dokuz Eylul University, Izmir International Biomedicine and Genome Institute
Verified email at deu.edu.tr
Cited by 873

[HTML][HTML] Next generation sequencing technology and genomewide data analysis: Perspectives for retinal research

V Chaitankar, G Karakülah, R Ratnapriya… - Progress in retinal and …, 2016 - Elsevier
The advent of high throughput next generation sequencing (NGS) has accelerated the pace
of discovery of disease-associated genetic variants and genomewide profiling of expressed …

[PDF][PDF] NRL-regulated transcriptome dynamics of developing rod photoreceptors

JW Kim, HJ Yang, MJ Brooks, L Zelinger, G Karakülah… - Cell reports, 2016 - cell.com
Gene regulatory networks (GRNs) guiding differentiation of cell types and cell assemblies in
the nervous system are poorly understood because of inherent complexities and …

[HTML][HTML] RdRp mutations are associated with SARS-CoV-2 genome evolution

D Eskier, G Karakülah, A Suner, Y Oktay - PeerJ, 2020 - peerj.com
COVID-19, caused by the novel SARS-CoV-2 virus, started in China in late 2019, and soon
became a global pandemic. With the help of thousands of viral genome sequences that have …

[HTML][HTML] Mutations of SARS-CoV-2 nsp14 exhibit strong association with increased genome-wide mutation load

D Eskier, A Suner, Y Oktay, G Karakülah - PeerJ, 2020 - peerj.com
SARS-CoV-2 is a betacoronavirus responsible for COVID-19, a pandemic with global
impact that first emerged in late 2019. Since then, the viral genome has shown considerable …

[HTML][HTML] PeTMbase: a database of plant endogenous target mimics (eTMs)

G Karakülah, K Yücebilgili Kurtoğlu, T Unver - PloS one, 2016 - journals.plos.org
MicroRNAs (miRNA) are small endogenous RNA molecules, which regulate target gene
expression at post-transcriptional level. Besides, miRNA activity can be controlled by a newly …

Alteration of miRNAs in small neuron-derived extracellular vesicles of alzheimer's disease patients and the effect of extracellular vesicles on microglial immune …

…, M Olcum, H Uzuner, G Karakülah, G Yener… - Journal of Molecular …, 2022 - Springer
Alzheimer's disease (AD) is one of the most severe neurodegenerative diseases observed
in the elderly population. Although the hallmarks of AD have been identified, the methods for …

[HTML][HTML] Expression dynamics of repetitive DNA in early human embryonic development

C Yandım, G Karakülah - BMC genomics, 2019 - Springer
Background The last decade witnessed a number of genome-wide studies on human pre-implantation,
which mostly focused on genes and provided only limited information on repeats, …

[HTML][HTML] “In the light of evolution:” keratins as exceptional tumor biomarkers

I Takan, G Karakülah, A Louka, A Pavlopoulou - PeerJ, 2023 - peerj.com
Keratins (KRTs) are the intermediate filament-forming proteins of epithelial cells, classified,
according to their physicochemical properties, into “soft” and “hard” keratins. They have a key …

[HTML][HTML] TRAIL promotes the polarization of human macrophages toward a proinflammatory M1 phenotype and is associated with increased survival in cancer patients …

…, A Bursalı, A Conforte, H Güner, G Karakülah… - Frontiers in …, 2023 - frontiersin.org
Background TNF-related apoptosis-inducing ligand (TRAIL) is a member of the TNF
superfamily that can either induce cell death or activate survival pathways after binding to death …

[HTML][HTML] TEffectR: an R package for studying the potential effects of transposable elements on gene expression with linear regression model

G Karakülah, N Arslan, C Yandım, A Suner - PeerJ, 2019 - peerj.com
Introduction Recent studies highlight the crucial regulatory roles of transposable elements (TEs)
on proximal gene expression in distinct biological contexts such as disease and …