User profiles for G. Uritskiy

Gherman Uritskiy

Amazon Research
Verified email at jhu.edu
Cited by 1747

[HTML][HTML] MetaWRAP—a flexible pipeline for genome-resolved metagenomic data analysis

GV Uritskiy, J DiRuggiero, J Taylor - Microbiome, 2018 - Springer
Background The study of microbiomes using whole-metagenome shotgun sequencing enables
the analysis of uncultivated microbial populations that may have important roles in their …

Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities

…, A Korobeynikov, I Tolstoganov, G Uritskiy… - Nature …, 2022 - nature.com
Microbial communities might include distinct lineages of closely related organisms that
complicate metagenomic assembly and prevent the generation of complete metagenome-…

[HTML][HTML] Critical assessment of metagenome interpretation: the second round of challenges

…, C Tong, M Trajkovski, J Tremblay, G Uritskiy… - Nature …, 2022 - nature.com
… b–g, Boxplots of completeness per genome and purity per bin, and bar charts of ARI, binned
bp and moderate or higher quality genomes recovered, by method, for each dataset: marine …

[HTML][HTML] Applying genome-resolved metagenomics to deconvolute the halophilic microbiome

G Uritskiy, J DiRuggiero - Genes, 2019 - mdpi.com
In the past decades, the study of microbial life through shotgun metagenomic sequencing
has rapidly expanded our understanding of environmental, synthetic, and clinical microbial …

Halophilic microbial community compositional shift after a rare rainfall in the Atacama Desert

G Uritskiy, S Getsin, A Munn, B Gomez-Silva… - The ISME …, 2019 - academic.oup.com
Understanding the mechanisms underlying microbial resistance and resilience to perturbations
is essential to predict the impact of climate change on Earth’s ecosystems. However, the …

Cellular life from the three domains and viruses are transcriptionally active in a hypersaline desert community

G Uritskiy, MJ Tisza, DR Gelsinger… - Environmental …, 2021 - Wiley Online Library
Cellular life from the three domains and viruses are transcriptionally active in a hypersaline
desert community - Uritskiy - 2021 - Environmental Microbiology - Wiley Online Library …

[HTML][HTML] A remarkable genetic shift in a transmitted/founder virus broadens antibody responses against HIV-1

S Jain, G Uritskiy, M Mahalingam, H Batra, S Chand… - eLife, 2024 - elifesciences.org
A productive HIV-1 infection in humans is often established by transmission and propagation
of a single transmitted/founder (T/F) virus, which then evolves into a complex mixture of …

[HTML][HTML] Environmental factors driving spatial heterogeneity in desert halophile microbial communities

G Uritskiy, A Munn, M Dailey, DR Gelsinger… - Frontiers in …, 2020 - frontiersin.org
… As an estimate for total biomass, cell numbers per g of substrate were counted for six of the
nodules at the top, middle, and bottom positions (108 samples in total). Cell numbers ranged …

[HTML][HTML] Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection: report from the Winter Mid-Atlantic …

…, NO Schliebs, DD Sommer, KL Ternus, G Uritskiy… - Microbiome, 2018 - Springer
The Mid-Atlantic Microbiome Meet-up (M 3 ) organization brings together academic, government,
and industry groups to share ideas and develop best practices for microbiome research…

Generation of lineage-resolved complete metagenome-assembled genomes by precision phasing

…, DM Portik, A Korobeynikov, I Tolstoganov, G Uritskiy… - bioRxiv, 2021 - biorxiv.org
Microbial communities in many environments include distinct lineages of closely related
organisms which have proved challenging to separate in metagenomic assembly, preventing …