User profiles for G. Uritskiy
Gherman UritskiyAmazon Research Verified email at jhu.edu Cited by 1747 |
[HTML][HTML] MetaWRAP—a flexible pipeline for genome-resolved metagenomic data analysis
Background The study of microbiomes using whole-metagenome shotgun sequencing enables
the analysis of uncultivated microbial populations that may have important roles in their …
the analysis of uncultivated microbial populations that may have important roles in their …
Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities
Microbial communities might include distinct lineages of closely related organisms that
complicate metagenomic assembly and prevent the generation of complete metagenome-…
complicate metagenomic assembly and prevent the generation of complete metagenome-…
[HTML][HTML] Critical assessment of metagenome interpretation: the second round of challenges
… b–g, Boxplots of completeness per genome and purity per bin, and bar charts of ARI, binned
bp and moderate or higher quality genomes recovered, by method, for each dataset: marine …
bp and moderate or higher quality genomes recovered, by method, for each dataset: marine …
[HTML][HTML] Applying genome-resolved metagenomics to deconvolute the halophilic microbiome
G Uritskiy, J DiRuggiero - Genes, 2019 - mdpi.com
In the past decades, the study of microbial life through shotgun metagenomic sequencing
has rapidly expanded our understanding of environmental, synthetic, and clinical microbial …
has rapidly expanded our understanding of environmental, synthetic, and clinical microbial …
Halophilic microbial community compositional shift after a rare rainfall in the Atacama Desert
G Uritskiy, S Getsin, A Munn, B Gomez-Silva… - The ISME …, 2019 - academic.oup.com
Understanding the mechanisms underlying microbial resistance and resilience to perturbations
is essential to predict the impact of climate change on Earth’s ecosystems. However, the …
is essential to predict the impact of climate change on Earth’s ecosystems. However, the …
Cellular life from the three domains and viruses are transcriptionally active in a hypersaline desert community
Cellular life from the three domains and viruses are transcriptionally active in a hypersaline
desert community - Uritskiy - 2021 - Environmental Microbiology - Wiley Online Library …
desert community - Uritskiy - 2021 - Environmental Microbiology - Wiley Online Library …
[HTML][HTML] A remarkable genetic shift in a transmitted/founder virus broadens antibody responses against HIV-1
A productive HIV-1 infection in humans is often established by transmission and propagation
of a single transmitted/founder (T/F) virus, which then evolves into a complex mixture of …
of a single transmitted/founder (T/F) virus, which then evolves into a complex mixture of …
[HTML][HTML] Environmental factors driving spatial heterogeneity in desert halophile microbial communities
G Uritskiy, A Munn, M Dailey, DR Gelsinger… - Frontiers in …, 2020 - frontiersin.org
… As an estimate for total biomass, cell numbers per g of substrate were counted for six of the
nodules at the top, middle, and bottom positions (108 samples in total). Cell numbers ranged …
nodules at the top, middle, and bottom positions (108 samples in total). Cell numbers ranged …
[HTML][HTML] Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection: report from the Winter Mid-Atlantic …
The Mid-Atlantic Microbiome Meet-up (M 3 ) organization brings together academic, government,
and industry groups to share ideas and develop best practices for microbiome research…
and industry groups to share ideas and develop best practices for microbiome research…
Generation of lineage-resolved complete metagenome-assembled genomes by precision phasing
Microbial communities in many environments include distinct lineages of closely related
organisms which have proved challenging to separate in metagenomic assembly, preventing …
organisms which have proved challenging to separate in metagenomic assembly, preventing …