The yjeE, yeaZ, and ygjD genes are highly conserved in the genomes of eubacteria, and
ygjD orthologs are also found throughout the Archaea and eukaryotes. In this study, we have …

Biofilms of sulfate-reducing bacteria (SRB) are of particular interest as members of this group
are culprits in corrosion of industrial metal and concrete pipelines as well as being key …

Sulfate-reducing microbes, such as Desulfovibrio vulgaris Hildenborough, cause “souring”
of petroleum reservoirs through produced sulfide and precipitate heavy metals, either as …

Sulfate-reducing bacteria (SRB) are obligate anaerobes that can couple their growth to the
reduction of sulfate. Despite the importance of SRB to global nutrient cycles and their …

Sulfate-reducing bacteria (SRB) are obligate anaerobes that can couple their growth to the
reduction of sulfate. Despite the importance of SRB to global nutrient cycles and their …

Transposon mutagenesis with next-generation sequencing (TnSeq) is a powerful approach
to annotate gene function in bacteria, but existing protocols for TnSeq require laborious …

… Statistical methods such as mutual information, Pearson correlation coefficient, Hamming
distance (D) and the chance co-occurrence probability distribution (P) have been developed to …

… cycA promoter to drive aerobic expression of NOR in P. denitrificans and (ii) a heterologous
… ) were introduced into NOR, and the proteins were expressed in P. denitrificans and E. coli. …

… nonredundant genome dataset, filtered at 90% similarity based on the frequency of shared
orthologs (Figure 1G), with an average of 0.22 as compared with 0.48 for annotated genes (p …

Identification of protein–protein interactions often provides insight into protein function, and
many cellular processes are performed by stable protein complexes. We used tandem affinity …