User profiles for Gavin A Huttley

Gavin Huttley

Professor of Computational Genomics, Australian National University
Verified email at anu.edu.au
Cited by 64095

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

…, S Holmes, H Holste, C Huttenhower, GA Huttley… - Nature …, 2019 - nature.com
To the Editor—Rapid advances in DNA-sequencing and bioinformatics technologies in the
past two decades have substantially improved understanding of the microbial world. This …

QIIME allows analysis of high-throughput community sequencing data

…, AG Peña, JK Goodrich, JI Gordon, GA Huttley… - Nature …, 2010 - nature.com
To the Editor: High-throughput sequencing is revolutionizing microbial ecology studies.
Efforts like the Human Microbiome Projects 1 and the US National Ecological Observatory …

[HTML][HTML] Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2's q2-feature-classifier plugin

…, JR Rideout, M Dillon, E Bolyen, R Knight, GA Huttley… - Microbiome, 2018 - Springer
Background Taxonomic classification of marker-gene sequences is an important step in
microbiome analysis. Results We present q2-feature-classifier ( https://github.com/qiime2/q2-…

Genetic Restriction of HIV-1 Infection and Progression to AIDS by a Deletion Allele of the CKR5 Structural Gene

M Dean, M Carrington, C Winkler, GA Huttley… - Science, 1996 - science.org
The chemokine receptor 5 (CKR5) protein serves as a secondary receptor on CD4 + T
lymphocytes for certain strains of human immunodeficiency virus-type 1 (HIV-1). The CKR5 …

Contrasting Genetic Influence of CCR2 and CCR5 Variants on HIV-1 Infection and Disease Progression

…, M Dean, M Carrington, C Winkler, GA Huttley… - Science, 1997 - science.org
The critical role of chemokine receptors (CCR5 and CXCR4) in human immunodeficiency
virus–type 1 (HIV-1) infection and pathogenesis prompted a search for polymorphisms in other …

Expansion of circulating T cells resembling follicular helper T cells is a fixed phenotype that identifies a subset of severe systemic lupus erythematosus

…, TJ Vyse, G Roncador, GA Huttley… - … : Official Journal of …, 2010 - Wiley Online Library
Objective. In the sanroque mouse model of lupus, pathologic germinal centers (GCs) arise
due to increased numbers of follicular helper T (Tfh) cells, resulting in high-affinity anti–double…

Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences

…, M Grabherr, JM Greally, W Gu, TA Hore, GA Huttley… - Nature, 2007 - nature.com
We report a high-quality draft of the genome sequence of the grey, short-tailed opossum (Monodelphis
domestica). As the first metatherian (‘marsupial’) species to be sequenced, the …

[PDF][PDF] Dating the origin of the CCR5-Δ32 AIDS-resistance allele by the coalescence of haplotypes

…, MW Smith, M Carrington, C Winkler, GA Huttley… - The American Journal of …, 1998 - cell.com
The CCR5-Δ32 deletion obliterates the CCR5 chemokine and the human immunodeficiency
virus (HIV)–1 coreceptor on lymphoid cells, leading to strong resistance against HIV-1 …

Loss of ACTN3 gene function alters mouse muscle metabolism and shows evidence of positive selection in humans

…, JT Seto, JM Raftery, KG Quinlan, GA Huttley… - Nature …, 2007 - nature.com
More than a billion humans worldwide are predicted to be completely deficient in the fast
skeletal muscle fiber protein α-actinin-3 owing to homozygosity for a premature stop codon …

Mitochondrial DNA sequences in ancient Australians: implications for modern human origins

…, ES Dennis, S Easteal, GA Huttley… - Proceedings of the …, 2001 - National Acad Sciences
DNA from ancient human remains provides perspectives on the origin of our species and the
relationship between molecular and morphological variation. We report analysis of mtDNA …