User profiles for Gemy G Kaithakottil

Gemy George Kaithakottil

Senior Bioinformatician / Developer, Earlham Institute
Verified email at earlham.ac.uk
Cited by 3955

An aphid RNA transcript migrates systemically within plants and is a virulence factor

Y Chen, A Singh, GG Kaithakottil… - Proceedings of the …, 2020 - National Acad Sciences
Aphids are sap-feeding insects that colonize a broad range of plant species and often
cause feeding damage and transmit plant pathogens, including bacteria, viruses, and viroids. …

[HTML][HTML] Identification of a non-canonical ciliate nuclear genetic code where UAA and UAG code for different amino acids

…, BH Jenkins, K Gharbi, GG Kaithakottil… - Plos …, 2023 - journals.plos.org
The genetic code is one of the most highly conserved features across life. Only a few lineages
have deviated from the “universal” genetic code. Amongst the few variants of the genetic …

[HTML][HTML] wigExplorer, a BioJS component to visualise wig data

AS Thanki, RC Jimenez, GG Kaithakottil… - …, 2014 - ncbi.nlm.nih.gov
wigExplorer is a BioJS component whose main purpose is to provide a platform for visualisation
of wig-formatted data. Wig files are extensively used by genome browsers such as the …

[PDF][PDF] wigExplorer

AS Thanki, RC Jimenez, GG Kaithakottil, M Corpas… - 2014 - researchgate.net
Numerous web applications exist for visualisation of biological data. Data can be prepared
for visualisation using a variety of formats, one of which is the widely used wiggle (wig) file. A …

Shifting the limits in wheat research and breeding using a fully annotated reference genome

…, H Rimbert, M Felder, N Guilhot, G Kaithakottil… - Science, 2018 - science.org
INTRODUCTION Wheat (Triticum aestivum L.) is the most widely cultivated crop on Earth,
contributing about a fifth of the total calories consumed by humans. Consequently, wheat …

An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for …

…, C Schudoma, GG Accinelli, G Kaithakottil… - Genome …, 2017 - genome.cshlp.org
Advances in genome sequencing and assembly technologies are generating many high-quality
genome sequences, but assemblies of large, repeat-rich polyploid genomes, such as …

[HTML][HTML] Genome sequence and genetic diversity of European ash trees

…, RH Ramirez-Gonzalez, D Swarbreck, G Kaithakottil… - Nature, 2017 - nature.com
Ash trees (genus Fraxinus, family Oleaceae) are widespread throughout the Northern
Hemisphere, but are being devastated in Europe by the fungus Hymenoscyphus fraxineus, …

Efficient and accurate detection of splice junctions from RNA-seq with Portcullis

D Mapleson, L Venturini, G Kaithakottil… - GigaScience, 2018 - academic.oup.com
Next-generation sequencing technologies enable rapid and cheap genome-wide transcriptome
analysis, providing vital information about gene structure, transcript expression, and …

[HTML][HTML] Chromosome-scale genome assembly provides insights into rye biology, evolution and agronomic potential

…, DB Fowler, A Fritz, A Himmelbach, G Kaithakottil… - Nature …, 2021 - nature.com
Rye (Secale cereale L.) is an exceptionally climate-resilient cereal crop, used extensively to
produce improved wheat varieties via introgressive hybridization and possessing the entire …

[HTML][HTML] Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species

TC Mathers, Y Chen, G Kaithakottil, F Legeai… - Genome biology, 2017 - Springer
Background The prevailing paradigm of host-parasite evolution is that arms races lead to
increasing specialisation via genetic adaptation. Insect herbivores are no exception and the …