Genome sequence and analysis of the tuber crop potato

X Xu, P Pan, S Cheng, B Zhang, D Mu, P Ni, G Zhang… - 2011 - cgspace.cgiar.org
Potato (Solanum tuberosum L.) is the world’s most important non-grain food crop and is central
to global food security. It is clonally propagated, highly heterozygous, autotetraploid, and …

[HTML][HTML] Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement

…, J Baek, BD Rosen, B Tar'an, T Millan, X Zhang… - Nature …, 2013 - nature.com
Chickpea (Cicer arietinum) is the second most widely grown legume crop after soybean,
accounting for a substantial proportion of human dietary nitrogen intake and playing a crucial …

[HTML][HTML] Genomic variation in 3,010 diverse accessions of Asian cultivated rice

…, S Tai, Z Wu, M Li, T Zheng, RR Fuentes, F Zhang… - Nature, 2018 - nature.com
Here we analyse genetic variation, population structure and diversity among 3,010 diverse
Asian cultivated rice (Oryza sativa L.) genomes from the 3,000 Rice Genomes Project. Our …

Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection

…, M Jian, J Wang, G Shao, J Wang, SSM Sun, G Zhang - Nature …, 2010 - nature.com
We report a large-scale analysis of the patterns of genome-wide genetic variation in soybeans.
We re-sequenced a total of 17 wild and 14 cultivated soybean genomes to an average of …

[PDF][PDF] Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers

…, T Michael, WR McCombie, B Yang, G Zhang… - Nature …, 2012 - nature.com
Pigeonpea is an important legume food crop grown primarily by smallholder farmers in many
semi-arid tropical regions of the world. We used the Illumina next-generation sequencing …

Comparative population genomics of maize domestication and improvement

…, RA Swanson-Wagner, P Tiffin, J Wang, G Zhang… - Nature …, 2012 - nature.com
Domestication and plant breeding are ongoing 10,000-year-old evolutionary experiments
that have radically altered wild species to meet human needs. Maize has undergone a …

[HTML][HTML] Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential

G Zhang, X Liu, Z Quan, S Cheng, X Xu, S Pan… - Nature …, 2012 - nature.com
Foxtail millet (Setaria italica), a member of the Poaceae grass family, is an important food and
fodder crop in arid regions and has potential for use as a C 4 biofuel. It is a model system …

Maize HapMap2 identifies extant variation from a genome in flux

…, Q Sun, MI Tenaillon, F Tian, J Wang, X Xu, Z Zhang… - Nature …, 2012 - nature.com
Whereas breeders have exploited diversity in maize for yield improvements, there has been
limited progress in using beneficial alleles in undomesticated varieties. Characterizing …

Exploring genetic variation in the tomato (Solanum section Lycopersicon) clade by whole‐genome sequencing

…, S Smit, R Finkers, J Wang, G Zhang… - The Plant …, 2014 - Wiley Online Library
We explored genetic variation by sequencing a selection of 84 tomato accessions and
related wild species representative of the Lycopersicon, Arcanum, Eriopersicon and …

SNP-Seek database of SNPs derived from 3000 rice genomes

…, VJ Ulat, D Chebotarov, G Zhang… - Nucleic acids …, 2015 - academic.oup.com
We have identified about 20 million rice SNPs by aligning reads from the 3000 rice genomes
project with the Nipponbare genome. The SNPs and allele information are organized into a …