User profiles for Genis Parra
Genis ParraCNAG - CRG Verified email at cnag.crg.eu Cited by 19178 |
[HTML][HTML] Are splicing mutations the most frequent cause of hereditary disease?
Disease-causing point mutations are assumed to act predominantly through subsequent
individual changes in the amino acid sequence that impair the normal function of proteins. …
individual changes in the amino acid sequence that impair the normal function of proteins. …
Geneid in drosophila
GeneID is a program to predict genes in anonymous genomic sequences designed with a
hierarchical structure. In the first step, splice sites, and start and stop codons are predicted and …
hierarchical structure. In the first step, splice sites, and start and stop codons are predicted and …
Using geneid to identify genes
This unit describes the usage of geneid, an efficient gene‐finding program that allows for the
analysis of large genomic sequences, including whole mammalian chromosomes. These …
analysis of large genomic sequences, including whole mammalian chromosomes. These …
Patterns of coding variation in the complete exomes of three Neandertals
S Castellano, G Parra… - Proceedings of the …, 2014 - National Acad Sciences
We present the DNA sequence of 17,367 protein-coding genes in two Neandertals from Spain
and Croatia and analyze them together with the genome sequence recently determined …
and Croatia and analyze them together with the genome sequence recently determined …
Tandem chimerism as a means to increase protein complexity in the human genome
The “one-gene, one-protein” rule, coined by Beadle and Tatum, has been fundamental to
molecular biology. The rule implies that the genetic complexity of an organism depends …
molecular biology. The rule implies that the genetic complexity of an organism depends …
[PDF][PDF] PrecisionFDA Truth Challenge V2: Calling variants from short and long reads in difficult-to-map regions
The precisionFDA Truth Challenge V2 aimed to assess the state of the art of variant calling
in challenging genomic regions. Starting with FASTQs, 20 challenge participants applied …
in challenging genomic regions. Starting with FASTQs, 20 challenge participants applied …
Sequence and analysis of chromosome 2 of Dictyostelium discoideum
…, PH Dear, R Lehmann, C Baumgart, G Parra… - Nature, 2002 - nature.com
The genome of the lower eukaryote Dictyostelium discoideum comprises six chromosomes.
Here we report the sequence of the largest, chromosome 2, which at 8 megabases (Mb) …
Here we report the sequence of the largest, chromosome 2, which at 8 megabases (Mb) …
Using geneid to identify genes
This unit describes the usage of geneid, an efficient gene‐finding program that allows for the
analysis of large genomic sequences, including whole mammalian chromosomes. These …
analysis of large genomic sequences, including whole mammalian chromosomes. These …
Comparison of mouse and human genomes followed by experimental verification yields an estimated 1,019 additional genes
A primary motivation for sequencing the mouse genome was to accelerate the discovery of
mammalian genes by using sequence conservation between mouse and human to identify …
mammalian genes by using sequence conservation between mouse and human to identify …
CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes
Motivation: The numbers of finished and ongoing genome projects are increasing at a rapid
rate, and providing the catalog of genes for these new genomes is a key challenge. …
rate, and providing the catalog of genes for these new genomes is a key challenge. …