User profiles for Genis Parra

Genis Parra

CNAG - CRG
Verified email at cnag.crg.eu
Cited by 19178

[HTML][HTML] Are splicing mutations the most frequent cause of hereditary disease?

N López-Bigas, B Audit, C Ouzounis, G Parra, R Guigó - FEBS letters, 2005 - Elsevier
Disease-causing point mutations are assumed to act predominantly through subsequent
individual changes in the amino acid sequence that impair the normal function of proteins. …

Geneid in drosophila

G Parra, E Blanco, R Guigó - Genome research, 2000 - genome.cshlp.org
GeneID is a program to predict genes in anonymous genomic sequences designed with a
hierarchical structure. In the first step, splice sites, and start and stop codons are predicted and …

Using geneid to identify genes

E Blanco, G Parra, R Guigó - Current protocols in …, 2007 - Wiley Online Library
This unit describes the usage of geneid, an efficient gene‐finding program that allows for the
analysis of large genomic sequences, including whole mammalian chromosomes. These …

Patterns of coding variation in the complete exomes of three Neandertals

S Castellano, G Parra… - Proceedings of the …, 2014 - National Acad Sciences
We present the DNA sequence of 17,367 protein-coding genes in two Neandertals from Spain
and Croatia and analyze them together with the genome sequence recently determined …

Tandem chimerism as a means to increase protein complexity in the human genome

G Parra, A Reymond, N Dabbouseh… - Genome …, 2006 - genome.cshlp.org
The “one-gene, one-protein” rule, coined by Beadle and Tatum, has been fundamental to
molecular biology. The rule implies that the genetic complexity of an organism depends …

[PDF][PDF] PrecisionFDA Truth Challenge V2: Calling variants from short and long reads in difficult-to-map regions

…, YP Du, SW Zhang, J Morata, R Tonda, G Parra… - Cell genomics, 2022 - cell.com
The precisionFDA Truth Challenge V2 aimed to assess the state of the art of variant calling
in challenging genomic regions. Starting with FASTQs, 20 challenge participants applied …

Sequence and analysis of chromosome 2 of Dictyostelium discoideum

…, PH Dear, R Lehmann, C Baumgart, G Parra… - Nature, 2002 - nature.com
The genome of the lower eukaryote Dictyostelium discoideum comprises six chromosomes.
Here we report the sequence of the largest, chromosome 2, which at 8 megabases (Mb) …

Using geneid to identify genes

T Alioto, E Blanco, G Parra… - Current Protocols in …, 2018 - Wiley Online Library
This unit describes the usage of geneid, an efficient gene‐finding program that allows for the
analysis of large genomic sequences, including whole mammalian chromosomes. These …

Comparison of mouse and human genomes followed by experimental verification yields an estimated 1,019 additional genes

…, P Agarwal, CP Ponting, G Parra… - Proceedings of the …, 2003 - National Acad Sciences
A primary motivation for sequencing the mouse genome was to accelerate the discovery of
mammalian genes by using sequence conservation between mouse and human to identify …

CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes

G Parra, K Bradnam, I Korf - Bioinformatics, 2007 - academic.oup.com
Motivation: The numbers of finished and ongoing genome projects are increasing at a rapid
rate, and providing the catalog of genes for these new genomes is a key challenge. …