User profiles for Giorgio Gonnella

Giorgio Gonnella

Institut Pasteur du Cambodge
Verified email at pasteur-kh.org
Cited by 1203

[HTML][HTML] Readjoiner: a fast and memory efficient string graph-based sequence assembler

G Gonnella, S Kurtz - BMC bioinformatics, 2012 - Springer
Background Ongoing improvements in throughput of the next-generation sequencing
technologies challenge the current generation of de novo sequence assemblers. Most recent …

Endemic hydrothermal vent species identified in the open ocean seed bank

G Gonnella, S Böhnke, D Indenbirken… - Nature …, 2016 - nature.com
Hydrothermal vent systems host microbial communities among which several microorganisms
have been considered endemic to this type of habitat. It is still unclear how these …

TDP-43 enhances translation of specific mRNAs linked to neurodegenerative disease

N Neelagandan, G Gonnella, S Dang… - Nucleic acids …, 2019 - academic.oup.com
The RNA-binding protein TDP-43 is heavily implicated in neurodegenerative disease.
Numerous patient mutations in TARDBP, the gene encoding TDP-43, combined with data from …

[HTML][HTML] Hydrothermal chimneys host habitat-specific microbial communities: analogues for studying the possible impact of mining seafloor massive sulfide deposits

Y Han, G Gonnella, N Adam, A Schippers… - Scientific reports, 2018 - nature.com
To assess the risk that mining of seafloor massive sulfides (SMS) from extinct hydrothermal
vent environments has for changing the ecosystem irreversibly, we sampled SMS analogous …

In situ chemistry and microbial community compositions in five deep‐sea hydrothermal fluid samples from Irina II in the Logatchev field

M Perner, G Gonnella, S Hourdez… - Environmental …, 2013 - Wiley Online Library
We present data on the co‐registered geochemistry (in situ mass spectrometry) and microbiology
(pyrosequencing of 16 S rRNA genes; V 1, V 2, V 3 regions) in five fluid samples from I …

GfaViz: flexible and interactive visualization of GFA sequence graphs

G Gonnella, N Niehus, S Kurtz - Bioinformatics, 2019 - academic.oup.com
… The authors wish it to be known that, in their opinion, Giorgio Gonnella and Niklas Niehus
… The authors wish it to be known that, in their opinion, Giorgio Gonnella and Niklas Niehus …

[HTML][HTML] TextFormats: Simplifying the definition and parsing of text formats in bioinformatics

G Gonnella - Plos one, 2022 - journals.plos.org
Text formats are common in bioinformatics, as they allow for editing and filtering using
standard tools, as well as, since text formats are often human readable, manual inspection and …

Handling temperature bursts reaching 464 C: different microbial strategies in the Sisters Peak hydrothermal chimney

M Perner, G Gonnella, S Kurtz… - Applied and …, 2014 - Am Soc Microbiol
The active venting Sisters Peak (SP) chimney on the Mid-Atlantic Ridge holds the current
temperature record for the hottest ever measured hydrothermal fluids (400C, accompanied by …

Microbial community compositions and geochemistry of sediments with increasing distance to the hydrothermal vent outlet in the Kairei field

…, C Kriete, D Garbe-Schönberg, G Gonnella… - Geomicrobiology …, 2020 - Taylor & Francis
Microbial metabolisms in sediments play a pivotal role in marine element cycling. In
hydrothermal sediments chemosynthetic microorganisms likely prevail, while in non-hydrothermally …

[HTML][HTML] Parameters governing the community structure and element turnover in Kermadec volcanic ash and hydrothermal fluids as monitored by inorganic electron …

S Böhnke, K Sass, G Gonnella, A Diehl… - Frontiers in …, 2019 - frontiersin.org
The microbial community composition and its functionality was assessed for hydrothermal
fluids and volcanic ash sediments from Haungaroa and hydrothermal fluids from the Brothers …