BioSimulators: a central registry of simulation engines and services for recommending specific tools
…, LP Smith, D Vasilescu, G Marupilla… - Nucleic acids …, 2022 - academic.oup.com
Computational models have great potential to accelerate bioscience, bioengineering, and
medicine. However, it remains challenging to reproduce and reuse simulations, in part, …
medicine. However, it remains challenging to reproduce and reuse simulations, in part, …
RunBioSimulations: an extensible web application that simulates a wide range of computational modeling frameworks, algorithms, and formats
Comprehensive, predictive computational models have significant potential for science,
bioengineering, and medicine. One promising way to achieve more predictive models is to …
bioengineering, and medicine. One promising way to achieve more predictive models is to …
Poincaré and SimBio: a versatile and extensible Python ecosystem for modeling systems.
Chemical Reaction Networks (CRNs) play a pivotal role in diverse fields such as systems
biology, biochemistry, chemical engineering, and epidemiology. High-level modelling of CRNs …
biology, biochemistry, chemical engineering, and epidemiology. High-level modelling of CRNs …
Zero lookahead? Zero problem. The window racer algorithm
Synchronization algorithms for parallel simulation struggle to attain speedup if the simulation
entities are tightly coupled and their interactions are difficult to predict. Window Racer is a …
entities are tightly coupled and their interactions are difficult to predict. Window Racer is a …