User profiles for Govinda Kamath
Govinda M. Kamath10x Genomics Verified email at alumni.stanford.edu Cited by 1863 |
Random access in large-scale DNA data storage
Synthetic DNA is durable and can encode digital data with high density, making it an attractive
medium for data storage. However, recovering stored data on a large-scale currently …
medium for data storage. However, recovering stored data on a large-scale currently …
Optimal linear codes with a local-error-correction property
Motivated by applications to distributed storage, Gopalan et al recently introduced the
interesting notion of information-symbol locality in a linear code. By this it is meant that each …
interesting notion of information-symbol locality in a linear code. By this it is meant that each …
Codes with local regeneration and erasure correction
Regenerating codes and codes with locality are two coding schemes that have recently been
proposed, which in addition to ensuring data collection and reliability, also enable efficient …
proposed, which in addition to ensuring data collection and reliability, also enable efficient …
[HTML][HTML] Fast and accurate single-cell RNA-seq analysis by clustering of transcript-compatibility counts
Current approaches to single-cell transcriptomic analysis are computationally intensive and
require assay-specific modeling, which limits their scope and generality. We propose a …
require assay-specific modeling, which limits their scope and generality. We propose a …
HINGE: long-read assembly achieves optimal repeat resolution
Long-read sequencing technologies have the potential to produce gold-standard de novo
genome assemblies, but fully exploiting error-prone reads to resolve repeats remains a …
genome assemblies, but fully exploiting error-prone reads to resolve repeats remains a …
Genome-scale screens identify factors regulating tumor cell responses to natural killer cells
To systematically define molecular features in human tumor cells that determine their
degree of sensitivity to human allogeneic natural killer (NK) cells, we quantified the NK cell …
degree of sensitivity to human allogeneic natural killer (NK) cells, we quantified the NK cell …
[PDF][PDF] Valid post-clustering differential analysis for single-cell RNA-Seq
Single-cell computational pipelines involve two critical steps: organizing cells (clustering)
and identifying the markers driving this organization (differential expression analysis). State-of-…
and identifying the markers driving this organization (differential expression analysis). State-of-…
Scaling up DNA data storage and random access retrieval
Current storage technologies can no longer keep pace with exponentially growing amounts
of data. Synthetic DNA offers an attractive alternative due to its potential information density …
of data. Synthetic DNA offers an attractive alternative due to its potential information density …
Community recovery in graphs with locality
Motivated by applications in domains such as social networks and computational biology,
we study the problem of community recovery in graphs with locality. In this problem, pairwise …
we study the problem of community recovery in graphs with locality. In this problem, pairwise …
Knowledge distillation as semiparametric inference
A popular approach to model compression is to train an inexpensive student model to mimic
the class probabilities of a highly accurate but cumbersome teacher model. Surprisingly, …
the class probabilities of a highly accurate but cumbersome teacher model. Surprisingly, …