User profiles for Gowri Nayar
 | Gowri NayarStanford University Verified email at stanford.edu Cited by 57 |
[HTML][HTML] Analysis and forecasting of global real time RT-PCR primers and probes for SARS-CoV-2
Rapid tests for active SARS-CoV-2 infections rely on reverse transcription polymerase chain
reaction (RT-PCR). RT-PCR uses reverse transcription of RNA into complementary DNA (…
reaction (RT-PCR). RT-PCR uses reverse transcription of RNA into complementary DNA (…
Functional genomics platform, a cloud-based platform for studying microbial life at scale
The rapid growth in biological sequence data is revolutionizing our understanding of genotypic
diversity and challenging conventional approaches to informatics. With the increasing …
diversity and challenging conventional approaches to informatics. With the increasing …
Computational Approaches to Drug Repurposing: Methods, Challenges, and Opportunities
HC Cousins, G Nayar, RB Altman - Annual Review of Biomedical …, 2024 - annualreviews.org
Drug repurposing refers to the inference of therapeutic relationships between a clinical
indication and existing compounds. As an emerging paradigm in drug development, drug …
indication and existing compounds. As an emerging paradigm in drug development, drug …
[HTML][HTML] Predicting epitope candidates for SARS-CoV-2
Epitopes are short amino acid sequences that define the antigen signature to which an antibody
or T cell receptor binds. In light of the current pandemic, epitope analysis and prediction …
or T cell receptor binds. In light of the current pandemic, epitope analysis and prediction …
[HTML][HTML] Semi-supervised pipeline for autonomous annotation of SARS-CoV-2 genomes
SARS-CoV-2 genomic sequencing efforts have scaled dramatically to address the current
global pandemic and aid public health. However, autonomous genome annotation of SARS-…
global pandemic and aid public health. However, autonomous genome annotation of SARS-…
Integrative and conjugative elements (ice) and associated cargo genes within and across hundreds of bacterial genera
Horizontal gene transfer mediated by integrative and conjugative elements (ICE) is considered
an important evolutionary mechanism of bacteria. It allows organisms to quickly evolve …
an important evolutionary mechanism of bacteria. It allows organisms to quickly evolve …
[HTML][HTML] ggMOB: Elucidation of genomic conjugative features and associated cargo genes across bacterial genera using genus-genus mobilization networks
Horizontal gene transfer mediated by conjugation is considered an important evolutionary
mechanism of bacteria. It allows organisms to quickly evolve new phenotypic properties …
mechanism of bacteria. It allows organisms to quickly evolve new phenotypic properties …
Analysis and Forecasting of Global RT-PCR Primers for SARS-CoV-2
Rapid tests for active SARS-CoV-2 infections rely on reverse transcription polymerase chain
reaction (RT-PCR). RT-PCR uses reverse transcription of RNA into complementary DNA (…
reaction (RT-PCR). RT-PCR uses reverse transcription of RNA into complementary DNA (…
Semi-supervised identification of sars-cov-2 molecular targets
SARS-CoV-2 genomic sequencing efforts have scaled dramatically to address the current
global pandemic and aid public health. In this work, we analyzed a corpus of 66,000 SARS-…
global pandemic and aid public health. In this work, we analyzed a corpus of 66,000 SARS-…
Survey of public assay data: opportunities and challenges to understanding antimicrobial resistance
Learning methods allow researchers to make predictions, draw inferences, and automate
generation of mathematical models. These models are crucial to solving real world problems …
generation of mathematical models. These models are crucial to solving real world problems …