User profiles for Greg Hannum

Gregory Hannum

Denovium Inc
Verified email at denovium.com
Cited by 6623

[PDF][PDF] Genome-wide methylation profiles reveal quantitative views of human aging rates

G Hannum, J Guinney, L Zhao, LI Zhang, G Hughes… - Molecular cell, 2013 - cell.com
The ability to measure human aging from molecular profiles has practical implications in
many fields, including disease prevention and treatment, forensics, and extension of life. …

An improved pig reference genome sequence to enable pig genetics and genomics research

…, P Flicek, CG Girón, DK Griffin, R Hall, G Hannum… - …, 2020 - academic.oup.com
Background The domestic pig (Sus scrofa) is important both as a food source and as a
biomedical model given its similarity in size, anatomy, physiology, metabolism, pathology, and …

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox

SA Becker, AM Feist, ML Mo, G Hannum, BØ Palsson… - Nature protocols, 2007 - nature.com
The manner in which microorganisms utilize their metabolic processes can be predicted
using constraint-based analysis of genome-scale metabolic networks. Herein, we present the …

Determination of fetal DNA fraction from the plasma of pregnant women using sequence read counts

SK Kim, G Hannum, J Geis, J Tynan, G Hogg… - Prenatal …, 2015 - Wiley Online Library
Objective This study introduces a novel method, referred to as SeqFF, for estimating the fetal
DNA fraction in the plasma of pregnant women and to infer the underlying mechanism that …

Phylogenetic distribution of CRISPR-Cas systems in antibiotic-resistant Pseudomonas aeruginosa

…, EM Barbu, D Shortridge, B Blanc, G Hannum… - MBio, 2015 - Am Soc Microbiol
Pseudomonas aeruginosa is an antibiotic-refractory pathogen with a large genome and
extensive genotypic diversity. Historically, P. aeruginosa has been a major model system for …

Detection of fetal subchromosomal abnormalities by sequencing circulating cell-free DNA from maternal plasma

C Zhao, J Tynan, M Ehrich, G Hannum… - Clinical …, 2015 - academic.oup.com
BACKGROUND The development of sequencing-based noninvasive prenatal testing (NIPT)
has been largely focused on whole-chromosome aneuploidies (chromosomes 13, 18, 21, X, …

Hair cortisol level as a biomarker for altered hypothalamic-pituitary-adrenal activity in female adolescents with posttraumatic stress disorder after the 2008 Wenchuan …

…, Y Wang, Q Wang, X Zhang, W Zhang, G Hannum… - Biological …, 2012 - Elsevier
BACKGROUND: The present study evaluated the accumulated changes in hair cortisol
levels of patients with posttraumatic stress disorder (PTSD) attributed to the 2008 Wenchuan …

[HTML][HTML] High temperature requirement factor A1 (HTRA1) gene regulates angiogenesis through transforming growth factor-β family member growth differentiation …

…, SL Lim, H Du, M Zhang, I Kozak, G Hannum… - Journal of Biological …, 2012 - ASBMB
Genome-wide association study (GWAS) has identified genetic variants in the promoter
region of the high temperature requirement factor A1 (HTRA1) gene associated with age-related …

Unrestrained markerless trait stacking in Nannochloropsis gaditana through combined genome editing and marker recycling technologies

…, N Bauman, R Kalb, G Hannum… - Proceedings of the …, 2018 - National Acad Sciences
Robust molecular tool kits in model and industrial microalgae are key to efficient targeted
manipulation of endogenous and foreign genes in the nuclear genome for basic research and, …

Antibody optimization enabled by artificial intelligence predictions of binding affinity and naturalness

…, E Yapici, J Meier, S McClain, M Weinstock, G Hannum… - BioRxiv, 2022 - biorxiv.org
Traditional antibody optimization approaches involve screening a small subset of the
available sequence space, often resulting in drug candidates with suboptimal binding affinity, …