[HTML][HTML] High-throughput total RNA sequencing in single cells using VASA-seq
Most methods for single-cell transcriptome sequencing amplify the termini of polyadenylated
transcripts, capturing only a small fraction of the total cellular transcriptome. This precludes …
transcripts, capturing only a small fraction of the total cellular transcriptome. This precludes …
[HTML][HTML] Role of TGFβ signaling in the pathogenesis of Alzheimer's disease
Aging is the main risk factor for Alzheimer’s disease (AD); being associated with conspicuous
changes on microglia activation. Aged microglia exhibit an increased expression of …
changes on microglia activation. Aged microglia exhibit an increased expression of …
A comprehensive survey of non-canonical splice sites in the human transcriptome
We uncovered the diversity of non-canonical splice sites at the human transcriptome using
deep transcriptome profiling. We mapped a total of 3.7 billion human RNA-seq reads and …
deep transcriptome profiling. We mapped a total of 3.7 billion human RNA-seq reads and …
[PDF][PDF] The helicase aquarius/EMB-4 is required to overcome intronic barriers to allow nuclear RNAi pathways to heritably silence transcription
…, T Di Domenico, KM Suen, A Nabih, GE Parada… - Developmental cell, 2017 - cell.com
Small RNAs play a crucial role in genome defense against transposable elements and guide
Argonaute proteins to nascent RNA transcripts to induce co-transcriptional gene silencing. …
Argonaute proteins to nascent RNA transcripts to induce co-transcriptional gene silencing. …
[PDF][PDF] High-throughput characterization of the role of non-B DNA motifs on promoter function
Alternative DNA conformations, termed non-B DNA structures, can affect transcription, but
the underlying mechanisms and their functional impact have not been systematically …
the underlying mechanisms and their functional impact have not been systematically …
[HTML][HTML] Secondary structures in RNA synthesis, splicing and translation
I Georgakopoulos-Soares, GE Parada… - Computational and …, 2022 - Elsevier
Even though the functional role of mRNA molecules is primarily decided by the nucleotide
sequence, several properties are determined by secondary structure conformations. …
sequence, several properties are determined by secondary structure conformations. …
[HTML][HTML] Alternative splicing modulation by G-quadruplexes
I Georgakopoulos-Soares, GE Parada… - Nature …, 2022 - nature.com
Alternative splicing is central to metazoan gene regulation, but the regulatory mechanisms
are incompletely understood. Here, we show that G-quadruplex (G4) motifs are enriched ~3-…
are incompletely understood. Here, we show that G-quadruplex (G4) motifs are enriched ~3-…
[PDF][PDF] Single paternal dexamethasone challenge programs offspring metabolism and reveals multiple candidates in RNA-mediated inheritance
…, GE Parada, F Gross, A Corcoba, J Kaur, E Grau… - IScience, 2021 - cell.com
Single traumatic events that elicit an exaggerated stress response can lead to the development
of neuropsychiatric conditions. Rodent studies suggested germline RNA as a mediator of …
of neuropsychiatric conditions. Rodent studies suggested germline RNA as a mediator of …
[HTML][HTML] A yeast-optimized single-cell transcriptomics platform elucidates how mycophenolic acid and guanine alter global mRNA levels
Stochastic gene expression leads to inherent variability in expression outcomes even in
isogenic single-celled organisms grown in the same environment. The Drop-Seq technology …
isogenic single-celled organisms grown in the same environment. The Drop-Seq technology …
[HTML][HTML] MicroExonator enables systematic discovery and quantification of microexons across mouse embryonic development
Background Microexons, exons that are ≤ 30 nucleotides, are a highly conserved and
dynamically regulated set of cassette exons. They have key roles in nervous system development …
dynamically regulated set of cassette exons. They have key roles in nervous system development …