Antibody cocktail to SARS-CoV-2 spike protein prevents rapid mutational escape seen with individual antibodies
…, K Lanza, N Negron, M Ni, Y Wei, GS Atwal… - Science, 2020 - science.org
Antibodies targeting the spike protein of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
present a promising approach to combat the coronavirus disease 2019 (COVID…
present a promising approach to combat the coronavirus disease 2019 (COVID…
Single-cell sequencing reveals αβ chain pairing shapes the T cell repertoire
A diverse T cell repertoire is a critical component of the adaptive immune system, providing
protection against invading pathogens and neoplastic changes, relying on the recognition of …
protection against invading pathogens and neoplastic changes, relying on the recognition of …
[PDF][PDF] Ancient trans-acting siRNAs confer robustness and sensitivity onto the auxin response
…, PF Perroud, M Hasebe, RS Quatrano, GS Atwal… - Developmental Cell, 2016 - cell.com
Novel developmental programs often evolve via cooption of existing genetic networks. To
understand this process, we explored cooption of the TAS3 tasiRNA pathway in the moss …
understand this process, we explored cooption of the TAS3 tasiRNA pathway in the moss …
REGN-COV2 antibodies prevent and treat SARS-CoV-2 infection in rhesus macaques and hamsters
…, M Ni, Y Wei, K Mohammadi, B Musser, GS Atwal… - Science, 2020 - science.org
An urgent global quest for effective therapies to prevent and treat coronavirus disease 2019
(COVID-19) is ongoing. We previously described REGN-COV2, a cocktail of two potent …
(COVID-19) is ongoing. We previously described REGN-COV2, a cocktail of two potent …
Intratumoral dendritic cell–CD4+ T helper cell niches enable CD8+ T cell differentiation following PD-1 blockade in hepatocellular carcinoma
…, L Li, C Adler, M Ni, Y Wei, W Wang, GS Atwal… - Nature medicine, 2023 - nature.com
Despite no apparent defects in T cell priming and recruitment to tumors, a large subset of T
cell rich tumors fail to respond to immune checkpoint blockade (ICB). We leveraged a …
cell rich tumors fail to respond to immune checkpoint blockade (ICB). We leveraged a …
Equitability, mutual information, and the maximal information coefficient
JB Kinney, GS Atwal - … of the National Academy of Sciences, 2014 - National Acad Sciences
How should one quantify the strength of association between two random variables without
bias for relationships of a specific form? Despite its conceptual simplicity, this notion of …
bias for relationships of a specific form? Despite its conceptual simplicity, this notion of …
[HTML][HTML] Common and rare variant associations with clonal haematopoiesis phenotypes
…, DJ Glass, LA Lotta, MN Cantor, GS Atwal… - Nature, 2022 - nature.com
Clonal haematopoiesis involves the expansion of certain blood cell lineages and has been
associated with ageing and adverse health outcomes 1 , 2 , 3 , 4 – 5 . Here we use exome …
associated with ageing and adverse health outcomes 1 , 2 , 3 , 4 – 5 . Here we use exome …
[PDF][PDF] The monoclonal antibody combination REGEN-COV protects against SARS-CoV-2 mutational escape in preclinical and human studies
…, N Chan, A Coppola, J Chiu, M Ni, Y Wei, GS Atwal… - Cell, 2021 - cell.com
Monoclonal antibodies against SARS-CoV-2 are a clinically validated therapeutic option
against COVID-19. Because rapidly emerging virus mutants are becoming the next major …
against COVID-19. Because rapidly emerging virus mutants are becoming the next major …
Information-based clustering
In an age of increasingly large data sets, investigators in many different disciplines have
turned to clustering as a tool for data analysis and exploration. Existing clustering methods, …
turned to clustering as a tool for data analysis and exploration. Existing clustering methods, …
Interactive analysis and assessment of single-cell copy-number variations
T Garvin, R Aboukhalil, J Kendall, T Baslan, GS Atwal… - Nature …, 2015 - nature.com
We present Ginkgo ( http://qb.cshl.edu/ginkgo ), a user-friendly, open-source web platform for
the analysis of single-cell copy-number variations (CNVs). Ginkgo automatically constructs …
the analysis of single-cell copy-number variations (CNVs). Ginkgo automatically constructs …