[HTML][HTML] Accurate whole human genome sequencing using reversible terminator chemistry

DR Bentley, S Balasubramanian, HP Swerdlow… - nature, 2008 - nature.com
DNA sequence information underpins genetic research, enabling discoveries of important
biological or medical benefit. Sequencing projects have traditionally used long (400–800 …

[HTML][HTML] A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers

…, SR Harris, TR Connor, A Bertoni, HP Swerdlow… - BMC genomics, 2012 - Springer
Background Next generation sequencing (NGS) technology has revolutionized genomic and
genetic research. The pace of change in this area is rapid with three major new sequencing …

G&T-seq: parallel sequencing of single-cell genomes and transcriptomes

…, R Banerjee, PD Ellis, MA Quail, HP Swerdlow… - Nature …, 2015 - nature.com
The simultaneous sequencing of a single cell's genome and transcriptome offers a powerful
means to dissect genetic variation and its effect on gene expression. Here we describe G&T-…

Demographic history and rare allele sharing among human populations

…, T Skelly, J Stalker, HP Swerdlow… - Proceedings of the …, 2011 - National Acad Sciences
High-throughput sequencing technology enables population-level surveys of human genomic
variation. Here, we examine the joint allele frequency distributions across continental …

[HTML][HTML] Single-cell RNA-seq of rheumatoid arthritis synovial tissue using low-cost microfluidic instrumentation

…, DE Orange, RB Darnell, HP Swerdlow… - Nature …, 2018 - nature.com
Droplet-based single-cell RNA-seq has emerged as a powerful technique for massively parallel
cellular profiling. While this approach offers the exciting promise to deconvolute cellular …

[HTML][HTML] Optimizing Illumina next-generation sequencing library preparation for extremely AT-biased genomes

…, DJ Turner, B MacInnis, DP Kwiatkowski, HP Swerdlow… - BMC genomics, 2012 - Springer
Background Massively parallel sequencing technology is revolutionizing approaches to
genomic and genetic research. Since its advent, the scale and efficiency of Next-Generation …

Optimal enzymes for amplifying sequencing libraries

…, SR Harris, TF Skelly, JA McQuillan, HP Swerdlow… - Nature …, 2012 - nature.com
PCR amplification introduces bias into Illumina sequencing libraries 1. Although amplification-free
library preparation solves this, micrograms of starting material are usually required. …

Efficient depletion of host DNA contamination in malaria clinical sequencing

…, DP Kwiatkowski, HP Swerdlow… - Journal of clinical …, 2013 - Am Soc Microbiol
The cost of whole-genome sequencing (WGS) is decreasing rapidly as next-generation
sequencing technology continues to advance, and the prospect of making WGS available for …

[HTML][HTML] SASI-Seq: sample assurance Spike-Ins, and highly differentiating 384 barcoding for Illumina sequencing

…, D Jackson, S Leonard, T Skelly, HP Swerdlow… - BMC genomics, 2014 - Springer
Background A minor but significant fraction of samples subjected to next-generation sequencing
methods are either mixed-up or cross-contaminated. These events can lead to false or …

Low-cost, high-sensitivity laser-induced fluorescence detection for DNA sequencing by capillary gel electrophoresis

DY Chen, HP Swerdlow, HR Harke, JZ Zhang… - … of Chromatography A, 1991 - Elsevier
Swerdlow and Gesteland [20] described DNA sequence analysis by use of capillary
polyacrylamide … Swerdlow and R. Gesteland, … Swerdlow, S. Wu, H. Harke and NJ Dovichi, J. …