User profiles for H. Bradley Shaffer

H Bradley SHAFFER

Distinguished Professor
Verified email at g.ucla.edu
Cited by 18398

[HTML][HTML] The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage

H Bradley Shaffer, P Minx, DE Warren, AM Shedlock… - Genome biology, 2013 - Springer
Background We describe the genome of the western painted turtle, Chrysemys picta bellii,
one of the most widespread, abundant, and well-studied turtles. We place the genome into a …

Declines of the California red‐legged frog: Climate, UV‐B, habitat, and pesticides hypotheses

C Davidson, H Bradley Shaffer… - Ecological …, 2001 - Wiley Online Library
The federally threatened California red‐legged frog (Rana aurora draytonii) has disappeared
from much of its range for unknown reasons. We mapped 237 historic locations for the …

Landscape genetics and least‐cost path analysis reveal unexpected dispersal routes in the California tiger salamander (Ambystoma californiense)

IJ Wang, WK Savage, H Bradley Shaffer - Molecular ecology, 2009 - Wiley Online Library
A major goal of landscape genetics is to understand how landscapes structure genetic
variation in natural populations. However, landscape genetics still lacks a framework for …

The earth BioGenome project 2020: Starting the clock

…, OA Ryder, JSM Sabir, HB Shaffer… - Proceedings of the …, 2022 - National Acad Sciences
November 2020 marked 2 y since the launch of the Earth BioGenome Project (EBP), which
aims to sequence all known eukaryotic species in a 10-y timeframe. Since then, significant …

Spatial tests of the pesticide drift, habitat destruction, UV‐B, and climate‐change hypotheses for California amphibian declines

C Davidson, HB Shaffer, MR Jennings - Conservation Biology, 2002 - Wiley Online Library
Wind‐borne pesticides have long been suggested as a cause of amphibian declines in areas
without obvious habitat destruction. In California, the transport and deposition of pesticides …

The decline of amphibians in California's Great Central Valley

RN Fisher, HB Shaffer - Conservation biology, 1996 - Wiley Online Library
Declines in amphibian populations are rarely reported on the community or ecosystem level.
We combined broad‐scale field sampling with historical analyses of museum records to …

The role of natural history collections in documenting species declines

HB Shaffer, RN Fisher, C Davidson - Trends in ecology & evolution, 1998 - cell.com
Efforts to document the decline of extant populations require a historical record of previous
occurrences. Natural history museums contain such information for most regions of the world, …

[PDF][PDF] Turtles and tortoises are in trouble

…, HR Quinn, WM Roosenburg, JA Seminoff, HB Shaffer… - Current Biology, 2020 - cell.com
Turtles and tortoises (chelonians) have been integral components of global ecosystems for
about 220 million years and have played important roles in human culture for at least …

Tests of turtle phylogeny: molecular, morphological, and paleontological approaches

HB Shaffer, P Meylan, ML McKnight - Systematic Biology, 1997 - academic.oup.com
We present phylogenetic analyses of both molecular and morphological data for the 23
major lineages of living turtles and seven key fossil taxa. Nearly 1 kilobase of cytochrome b …

Troubleshooting molecular phylogenetic analyses

MJ Sanderson, HB Shaffer - Annual review of ecology and …, 2002 - annualreviews.org
▪ Abstract The number, size, and scope of phylogenetic analyses using molecular data has
increased steadily in recent years. This has simultaneously led to a dramatic improvement in …