User profiles for H. Koohy

Hashem Koohy

Oxford University
Verified email at rdm.ox.ac.uk
Cited by 2572

[HTML][HTML] Can we predict T cell specificity with digital biology and machine learning?

…, RA Fernandes, M Basham, G Ogg, H Koohy - Nature Reviews …, 2023 - nature.com
Recent advances in machine learning and experimental biology have offered breakthrough
solutions to problems such as protein structure prediction that were long thought to be …

Colonic epithelial cell diversity in health and inflammatory bowel disease

…, BM Kessler, R Fischer, R Goldin, H Koohy… - Nature, 2019 - nature.com
The colonic epithelium facilitates host–microorganism interactions to control mucosal
immunity, coordinate nutrient recycling and form a mucus barrier. Breakdown of the epithelial …

[PDF][PDF] Structural remodeling of the human colonic mesenchyme in inflammatory bowel disease

…, D Ahern, KD Puri, J Henault, F Gervais, H Koohy… - Cell, 2018 - cell.com
Intestinal mesenchymal cells play essential roles in epithelial homeostasis, matrix
remodeling, immunity, and inflammation. But the extent of heterogeneity within the colonic …

[HTML][HTML] Predicting cross-reactivity and antigen specificity of T cell receptors

…, G Napolitani, G Ogg, A Simmons, H Koohy - Frontiers in …, 2020 - frontiersin.org
Adaptive immune recognition is mediated by specific interactions between heterodimeric T
cell receptors (TCRs) and their cognate peptide-MHC (pMHC) ligands, and the methods to …

[PDF][PDF] Spatiotemporal analysis of human intestinal development at single-cell resolution

…, E Morrissey, C Cunningham, PRV Johnson, H Koohy… - Cell, 2021 - cell.com
Development of the human intestine is not well understood. Here, we link single-cell RNA
sequencing and spatial transcriptomics to characterize intestinal morphogenesis through time. …

Single-cell atlas of colonic CD8+ T cells in ulcerative colitis

…, G Napolitani, O Brain, C Morimoto, H Koohy… - Nature medicine, 2020 - nature.com
h, Upset plot showing TCR clones shared between different clusters, each shared clone
visualized as an ‘interaction’ and indicated by a black circle joined by black lines. Each unique …

[PDF][PDF] Weakly prime modules

M Behboodi, H Koohy - Vietnam J. Math, 2004 - math.ac.vn
A left R-module M is called weakly prime module if the annihilator of any nonzero submodule
of M is a prime ideal and a proper submodule P of M is called weakly prime submodule if …

[HTML][HTML] In silico identification of vaccine targets for 2019-nCoV

CH Lee, H Koohy - F1000Research, 2020 - ncbi.nlm.nih.gov
Background: The newly identified coronavirus known as 2019-nCoV has posed a serious
global health threat. According to the latest report (18-February-2020), it has infected more …

[HTML][HTML] Potential CD8+ T cell cross-reactivity against SARS-CoV-2 conferred by other coronavirus strains

…, G Ogg, A Simmons, G Napolitani, H Koohy - Frontiers in …, 2020 - frontiersin.org
While individuals infected with coronavirus disease 2019 (COVID-19) manifested a broad
range in susceptibility and severity to the disease, the pre-existing immune memory to related …

[HTML][HTML] A comparison of peak callers used for DNase-Seq data

H Koohy, TA Down, M Spivakov, T Hubbard - PloS one, 2014 - journals.plos.org
Genome-wide profiling of open chromatin regions using DNase I and high-throughput
sequencing (DNase-seq) is an increasingly popular approach for finding and studying regulatory …